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The map label for this gene is xseB

Identifier: 187734825

GI number: 187734825

Start: 371302

End: 371562

Strand: Direct

Name: xseB

Synonym: Amuc_0314

Alternate gene names: 187734825

Gene position: 371302-371562 (Clockwise)

Preceding gene: 187734824

Following gene: 187734826

Centisome position: 13.94

GC content: 52.11

Gene sequence:

>261_bases
ATGGCCAAACAACGGAAAAACGCTCCCGGATTTGAAGAATCCGTAGCACGCCTGGAAGAAATCATACGCCTGACGGAAGC
CCCCGTCACCGAGCTGGAAGACATGATAGCCCTGGTGGAAGAAGGCAATAAGCTCATCCGTCACTGCCGCAGCATCCTGC
ATGATGCGGAACTGCGCATTCAAACTCTCAGCAACCCGGAAACCGTTCAGGATAAAACGGATACTGATGAACCAGACAGC
AATGAATTCTCCCTCACCTGA

Upstream 100 bases:

>100_bases
CAGCGCTTTGGAACGCCTGACTCCCGCCAATTCATTCAGGGAGCGGAAATGATTCTTTACAAAGACCTTCAGAAAACCGC
CCCTCAACCTTAATTCCCAT

Downstream 100 bases:

>100_bases
ACTTCCGGAACTGCTGGCAAGCATCCGCAGTCACGCAGATCTGATGGAAATCCCTGAGTCGGAACTGCCCAGGCTTGCGG
AAGAAATCCGGAATACTCTC

Product: Exonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 86; Mature: 85

Protein sequence:

>86_residues
MAKQRKNAPGFEESVARLEEIIRLTEAPVTELEDMIALVEEGNKLIRHCRSILHDAELRIQTLSNPETVQDKTDTDEPDS
NEFSLT

Sequences:

>Translated_86_residues
MAKQRKNAPGFEESVARLEEIIRLTEAPVTELEDMIALVEEGNKLIRHCRSILHDAELRIQTLSNPETVQDKTDTDEPDS
NEFSLT
>Mature_85_residues
AKQRKNAPGFEESVARLEEIIRLTEAPVTELEDMIALVEEGNKLIRHCRSILHDAELRIQTLSNPETVQDKTDTDEPDSN
EFSLT

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_AKKM8 (B2UMV0)

Other databases:

- EMBL:   CP001071
- RefSeq:   YP_001876937.1
- GeneID:   6275062
- GenomeReviews:   CP001071_GR
- KEGG:   amu:Amuc_0314
- HOGENOM:   HBG728416
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 9778; Mature: 9647

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQRKNAPGFEESVARLEEIIRLTEAPVTELEDMIALVEEGNKLIRHCRSILHDAELRI
CCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
QTLSNPETVQDKTDTDEPDSNEFSLT
HCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKQRKNAPGFEESVARLEEIIRLTEAPVTELEDMIALVEEGNKLIRHCRSILHDAELRI
CCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
QTLSNPETVQDKTDTDEPDSNEFSLT
HCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA