| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is gpmI
Identifier: 187734820
GI number: 187734820
Start: 364766
End: 366310
Strand: Reverse
Name: gpmI
Synonym: Amuc_0309
Alternate gene names: 187734820
Gene position: 366310-364766 (Counterclockwise)
Preceding gene: 187734821
Following gene: 187734819
Centisome position: 13.75
GC content: 55.6
Gene sequence:
>1545_bases ATGTCTTCTAAAAAGCCTGTCGTTCTTGTTATTCGCGACGGCTGGGGCCGCAATCCGTTGGGGCCTGATGTCGCGAAAGA GTACGGTGACGCCACTGTTCTGGCTGATACCCCCTTTACTGATTACCTCCTTGCCAACTATCCCCACAGCCTGCTGGGCG CTTCCGGGGAGGACGTGGGCCTTCCGGACGGCCAGATGGGTAATTCCGAAGTAGGACACTTGAACCTGGGTGCGGGCCGC GTTGTCTTTCAGGACCTCTGCCGGGTGGATAATGCCATCAAAGATGGGTCCATGGGGGAAAACGCCGTGCTGAAGACCGC TTTTTCCCAGGCCGCTTCTTCCCGTCTGCACCTGCTTGGCCTGGTGAGTGACGGCGGCGTGCACAGCCATATCAACCATT TGATCGGCATCGTCAAATATGCTTATGAAGCGGGTGTCCGCGATATTTGCATCCATGCCATTACGGATGGACGTGACTGC TCGCCAACCAGTGGGGTCGGCTTTATTCGCCAGCTGGAGGAAGCCGTCAGGCCGTACGGCGCCAAAATTGCCACGGTTGT CGGCCGTTTCTATGCGATGGACCGGGATAAGCGCTGGGACCGCAACAAGCTGGCATGGGATGCCATCGTTCTGGGGCGCG GCGAACAGTGCTCCTGCTCCCCTGCCGAATATGTGGAGCAGTGTTATGCGAAGGGGGAGACGGATGAGTTCCTGAAGCCC GGCATTTTTGCCTATGGCAACGAACAGCGCGTGAGGGATAACGATGTGGTGTTCTTCTTTAATTTCCGTGCGGACCGCGC CCGGCAGATGAGCGACGCTTTCCTTTACCCCGAATTTGACGGATTTGACCGTGAAGTAACGCCCAAAGTGCACTATGTGA CGTTGACGGAATACGATGCCAAGTATCCCTCTCCCATTGTTTTTGAACAGGAACAGCTGAACAATATTTTCGGGCAGATT GTGTCGGAAGCCGGGAAAACCCAGCTCCGCATAGCGGAAACGGAAAAGTACGCCCACGTTACTTTCTTCTTTAACGGAGG TGTGGAGACCCAGTTCCCCGGAGAAGACCGCATCCTTGTTCCTTCCCCCCGGGAAGTGGCTACTTATGACCTGAAGCCCC AGATGAGCGCGGCAGAAGTGGCGGATAAATTTGTGGACGCTGTGAACAAGTATGATGTGGTAATCATGAATTTCGCCAAT GGGGACATGGTTGGCCATACCGGATTTGTGGAAGCCGGCATCGCCGCCTGCGAAGCAGTGGACAGCGCCTTGGAAAAATG TGTGAAGAAGGTGTTGGAACTTGGCGGCAAGCTGCTTATTACGGCGGATCATGGCAATGCCGAACACATGCGCAATGAGG ATGGTTCTCCGAATACAGCCCACACGACCAACCTTGTGGATCTCATTTACGTGGCGGACGACAAGGATCAGGTAACTCTC TCCGATGGCATTCTGGCGGATGTCGCTCCCACGCTGCTGAGCCTGATGGGGCTGAAACAGCCTGCCGAAATGTCCGGACA TTCCCTGGTGACGCCTGGGAAATAG
Upstream 100 bases:
>100_bases GTGTGGGGAAGGGCGGCAAACCTCAGGCAATTCCGGAATCGGAGAGGGAATGCCTGATTTCAGGCTTTTCAAAAGGAGGG GATGCCTGTAAATAAAGCCT
Downstream 100 bases:
>100_bases CGGGCTGCTGAGTTCATTGATGAAATCCGTTTCCGGATGCGTTCCGGAAACGGATTTTTCTATGTCATGCTTTCCGGACG GGGCAAAATGGGAAAGCAGG
Product: phosphoglyceromutase
Products: NA
Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; iPGM
Number of amino acids: Translated: 514; Mature: 513
Protein sequence:
>514_residues MSSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVGLPDGQMGNSEVGHLNLGAGR VVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLGLVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDC SPTSGVGFIRQLEEAVRPYGAKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKP GIFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDAKYPSPIVFEQEQLNNIFGQI VSEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILVPSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFAN GDMVGHTGFVEAGIAACEAVDSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTL SDGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK
Sequences:
>Translated_514_residues MSSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVGLPDGQMGNSEVGHLNLGAGR VVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLGLVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDC SPTSGVGFIRQLEEAVRPYGAKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKP GIFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDAKYPSPIVFEQEQLNNIFGQI VSEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILVPSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFAN GDMVGHTGFVEAGIAACEAVDSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTL SDGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK >Mature_513_residues SSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVGLPDGQMGNSEVGHLNLGAGRV VFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLGLVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDCS PTSGVGFIRQLEEAVRPYGAKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKPG IFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDAKYPSPIVFEQEQLNNIFGQIV SEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILVPSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFANG DMVGHTGFVEAGIAACEAVDSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTLS DGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
COG id: COG0696
COG function: function code G; Phosphoglyceromutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BPG-independent phosphoglycerate mutase family
Homologues:
Organism=Escherichia coli, GI1790041, Length=517, Percent_Identity=49.5164410058027, Blast_Score=480, Evalue=1e-137, Organism=Caenorhabditis elegans, GI32564249, Length=522, Percent_Identity=46.1685823754789, Blast_Score=416, Evalue=1e-116, Organism=Caenorhabditis elegans, GI17507741, Length=522, Percent_Identity=46.1685823754789, Blast_Score=416, Evalue=1e-116,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): GPMI_AKKM8 (B2UMU5)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001876932.1 - ProteinModelPortal: B2UMU5 - GeneID: 6275075 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_0309 - HOGENOM: HBG613255 - OMA: DHGNAEL - ProtClustDB: PRK05434 - GO: GO:0005737 - GO: GO:0006096 - HAMAP: MF_01038 - InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR011258 - InterPro: IPR006124 - InterPro: IPR005995 - Gene3D: G3DSA:3.40.720.10 - Gene3D: G3DSA:3.40.1450.10 - PIRSF: PIRSF001492 - TIGRFAMs: TIGR01307
Pfam domain/function: PF06415 iPGM_N; PF01676 Metalloenzyme; SSF53649 Alkaline_phosphatase_core; SSF64158 BPG-indep_PGM_N
EC number: =5.4.2.1
Molecular weight: Translated: 56145; Mature: 56014
Theoretical pI: Translated: 4.78; Mature: 4.78
Prosite motif: NA
Important sites: ACT_SITE 69-69
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVG CCCCCCEEEEEECCCCCCCCCHHHHHHHCCEEEEECCCCHHHHHHCCCHHHHCCCCCCCC LPDGQMGNSEVGHLNLGAGRVVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLG CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE LVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDCSPTSGVGFIRQLEEAVRPYG EECCCCHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC AKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKP HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHCC GIFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDA CEEEECCCCEECCCCEEEEEECCCHHHHHHHCCEECCCCCCCCCCCCCEEEEEEEEECCC KYPSPIVFEQEQLNNIFGQIVSEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILV CCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEC PSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFANGDMVGHTGFVEAGIAACEAV CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH DSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTL HHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEE SDGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK CCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCC >Mature Secondary Structure SSKKPVVLVIRDGWGRNPLGPDVAKEYGDATVLADTPFTDYLLANYPHSLLGASGEDVG CCCCCEEEEEECCCCCCCCCHHHHHHHCCEEEEECCCCHHHHHHCCCHHHHCCCCCCCC LPDGQMGNSEVGHLNLGAGRVVFQDLCRVDNAIKDGSMGENAVLKTAFSQAASSRLHLLG CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCEEEEE LVSDGGVHSHINHLIGIVKYAYEAGVRDICIHAITDGRDCSPTSGVGFIRQLEEAVRPYG EECCCCHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCC AKIATVVGRFYAMDRDKRWDRNKLAWDAIVLGRGEQCSCSPAEYVEQCYAKGETDEFLKP HHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCHHHHCC GIFAYGNEQRVRDNDVVFFFNFRADRARQMSDAFLYPEFDGFDREVTPKVHYVTLTEYDA CEEEECCCCEECCCCEEEEEECCCHHHHHHHCCEECCCCCCCCCCCCCEEEEEEEEECCC KYPSPIVFEQEQLNNIFGQIVSEAGKTQLRIAETEKYAHVTFFFNGGVETQFPGEDRILV CCCCCEEECHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEECCCCCCCCCCCEEEC PSPREVATYDLKPQMSAAEVADKFVDAVNKYDVVIMNFANGDMVGHTGFVEAGIAACEAV CCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHH DSALEKCVKKVLELGGKLLITADHGNAEHMRNEDGSPNTAHTTNLVDLIYVADDKDQVTL HHHHHHHHHHHHHCCCEEEEEECCCCHHHHCCCCCCCCCCCCCCEEEEEEEECCCCCEEE SDGILADVAPTLLSLMGLKQPAEMSGHSLVTPGK CCCCHHHHHHHHHHHHCCCCCCCCCCCEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA