| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is surA [C]
Identifier: 187734800
GI number: 187734800
Start: 345991
End: 347145
Strand: Direct
Name: surA [C]
Synonym: Amuc_0289
Alternate gene names: 187734800
Gene position: 345991-347145 (Clockwise)
Preceding gene: 187734795
Following gene: 187734801
Centisome position: 12.99
GC content: 54.81
Gene sequence:
>1155_bases ATGCCGGAGGCATTAAAAATACTCTTCTCTCCCCCCATGAATATCAGGACCCACATCCAGGCGCTTCTCATCTGTACCAT GCCCCTGTCCGCACAGGGGCAAAGCATCGTGGATTCACGGGCCTCCCTTCCACGAGCCGTCCAGCTTCACGGGGATGAAG GCAGGGAAACGGTGCGGCCAGACGAATCCAAGCGCATCTCTCCGAAAGAAGCGCCGGCATCCCGTGTTCAGCCCCAGCGG ATCGTCAACCGGATTGCCGCCACAGTCAACGGCCGTCCCATCACGGCCAATGAGGTCAGCGTGCGTCTCATGCCCATCGG AGCACAGCTCGCGGCCCAGTATCCCAAACAGGGGCCCGAATTCTACAAGCAACTGGCCCTGGCGAAAAAAAACATCATTG AAGACCTGGTGGAGCGAGAACTGCTCCGCAATGAATTTGAAGGCATGGGCGGCGTCATTAGGGACTCTCTCATTGACCAG GAAGTCAACCGCACCATCCTGACCACCTTTAACGGAGATCGTTCCGCCTTCCTGAAAAACCTGAGCCTCTCCGGCATGAC CATCCGCGCTTTCCGGGAAATGACGAAAAAACAGCTTCAGGTTCAAATCATGCGGGCTTCCAAATACGACCAGGAAATAC CGCCTACTCCGGAGGAAATACAGCAGGAATACGAATCTACCAAAGAACAATACCGGGACCTGACCAAAGACAAAATCAAA TTCAAGAAAATCTTCATTCCCATGCTGGGGGATGACTCCGCCTCCACGCCGGAAGTACAGCTGAACCTGGCGGAACTCAT CGCCAAGGAAATCAAATCCAAAAACGCCACCTTTGAGGAAATGGCCAAACGCTACTCCAAGGATCTATATGCGGAAAAAG GCGGTGACTGGCCCGTTACGGAACGCTCCACGCTCTCCCCGGAATCCGCCGCCATCATCTTTGGCGCACAGCCCGGCGAA ATCATCGGACCGTTGGTGGACTCCACCGGCTTCACCATCGTATTGGTGGAGAAAAAGGAACTGGCGCCGCCGCCCCCCCT CTCCGCCATCAAGGAGCAGATTGACATCATGGCGCGCAACAAGCGCAGCAATGAACGTTATAAAAAATGGGTGGAACGCC TCCGGAAAAAAGCCATCGTCAAAATATACATCTGA
Upstream 100 bases:
>100_bases TCCACAGTCAGCAAAAGTGCAGGAACCGGCATCCCGCCCATGCCGGGCAGCATCCATACATACCCAGAAATAGATTGTCT TTGCAGGGCTGTCCCCTATC
Downstream 100 bases:
>100_bases TTCTTCTCCTTTCCCCATTGCCGGACCGGCCCATTCAACAAGGCCGGTCCGGCGTTCTCTCTTTCATTTCCCCTGTTTTT CTTTCCGCCAACCGTTCCGT
Product: PpiC-type peptidyl-prolyl cis-trans isomerase
Products: Isomerized Proline [C]
Alternate protein names: PPIC-Type PPIASE Domain Protein; Parvulin-Like Peptidyl-Prolyl Isomerase
Number of amino acids: Translated: 384; Mature: 383
Protein sequence:
>384_residues MPEALKILFSPPMNIRTHIQALLICTMPLSAQGQSIVDSRASLPRAVQLHGDEGRETVRPDESKRISPKEAPASRVQPQR IVNRIAATVNGRPITANEVSVRLMPIGAQLAAQYPKQGPEFYKQLALAKKNIIEDLVERELLRNEFEGMGGVIRDSLIDQ EVNRTILTTFNGDRSAFLKNLSLSGMTIRAFREMTKKQLQVQIMRASKYDQEIPPTPEEIQQEYESTKEQYRDLTKDKIK FKKIFIPMLGDDSASTPEVQLNLAELIAKEIKSKNATFEEMAKRYSKDLYAEKGGDWPVTERSTLSPESAAIIFGAQPGE IIGPLVDSTGFTIVLVEKKELAPPPPLSAIKEQIDIMARNKRSNERYKKWVERLRKKAIVKIYI
Sequences:
>Translated_384_residues MPEALKILFSPPMNIRTHIQALLICTMPLSAQGQSIVDSRASLPRAVQLHGDEGRETVRPDESKRISPKEAPASRVQPQR IVNRIAATVNGRPITANEVSVRLMPIGAQLAAQYPKQGPEFYKQLALAKKNIIEDLVERELLRNEFEGMGGVIRDSLIDQ EVNRTILTTFNGDRSAFLKNLSLSGMTIRAFREMTKKQLQVQIMRASKYDQEIPPTPEEIQQEYESTKEQYRDLTKDKIK FKKIFIPMLGDDSASTPEVQLNLAELIAKEIKSKNATFEEMAKRYSKDLYAEKGGDWPVTERSTLSPESAAIIFGAQPGE IIGPLVDSTGFTIVLVEKKELAPPPPLSAIKEQIDIMARNKRSNERYKKWVERLRKKAIVKIYI >Mature_383_residues PEALKILFSPPMNIRTHIQALLICTMPLSAQGQSIVDSRASLPRAVQLHGDEGRETVRPDESKRISPKEAPASRVQPQRI VNRIAATVNGRPITANEVSVRLMPIGAQLAAQYPKQGPEFYKQLALAKKNIIEDLVERELLRNEFEGMGGVIRDSLIDQE VNRTILTTFNGDRSAFLKNLSLSGMTIRAFREMTKKQLQVQIMRASKYDQEIPPTPEEIQQEYESTKEQYRDLTKDKIKF KKIFIPMLGDDSASTPEVQLNLAELIAKEIKSKNATFEEMAKRYSKDLYAEKGGDWPVTERSTLSPESAAIIFGAQPGEI IGPLVDSTGFTIVLVEKKELAPPPPLSAIKEQIDIMARNKRSNERYKKWVERLRKKAIVKIYI
Specific function: Assist In The Folding Of Extracytoplasmic Proteins. Essential For The Survival Of E.Coli In Stationary Phase. [C]
COG id: COG0760
COG function: function code O; Parvulin-like peptidyl-prolyl isomerase
Gene ontology:
Cell location: Periplasmic Protein [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: 400 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 160 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 5.2.1.8 [C]
Molecular weight: Translated: 43342; Mature: 43211
Theoretical pI: Translated: 9.90; Mature: 9.90
Prosite motif: PS50198 PPIC_PPIASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEALKILFSPPMNIRTHIQALLICTMPLSAQGQSIVDSRASLPRAVQLHGDEGRETVRP CCCHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCC DESKRISPKEAPASRVQPQRIVNRIAATVNGRPITANEVSVRLMPIGAQLAAQYPKQGPE CCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCEECCCEEEEEEECCHHHHHHCCCCCHH FYKQLALAKKNIIEDLVERELLRNEFEGMGGVIRDSLIDQEVNRTILTTFNGDRSAFLKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHH LSLSGMTIRAFREMTKKQLQVQIMRASKYDQEIPPTPEEIQQEYESTKEQYRDLTKDKIK CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FKKIFIPMLGDDSASTPEVQLNLAELIAKEIKSKNATFEEMAKRYSKDLYAEKGGDWPVT HHHEEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC ERSTLSPESAAIIFGAQPGEIIGPLVDSTGFTIVLVEKKELAPPPPLSAIKEQIDIMARN CCCCCCCCCCEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC KRSNERYKKWVERLRKKAIVKIYI CCCHHHHHHHHHHHHHCCEEEEEC >Mature Secondary Structure PEALKILFSPPMNIRTHIQALLICTMPLSAQGQSIVDSRASLPRAVQLHGDEGRETVRP CCHHEEEECCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCC DESKRISPKEAPASRVQPQRIVNRIAATVNGRPITANEVSVRLMPIGAQLAAQYPKQGPE CCCCCCCCCCCCHHCCCHHHHHHHHHHHCCCCCEECCCEEEEEEECCHHHHHHCCCCCHH FYKQLALAKKNIIEDLVERELLRNEFEGMGGVIRDSLIDQEVNRTILTTFNGDRSAFLKN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCEEEEEECCCHHHHHHH LSLSGMTIRAFREMTKKQLQVQIMRASKYDQEIPPTPEEIQQEYESTKEQYRDLTKDKIK CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH FKKIFIPMLGDDSASTPEVQLNLAELIAKEIKSKNATFEEMAKRYSKDLYAEKGGDWPVT HHHEEEEEECCCCCCCCCEEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCC ERSTLSPESAAIIFGAQPGEIIGPLVDSTGFTIVLVEKKELAPPPPLSAIKEQIDIMARN CCCCCCCCCCEEEEECCCCHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHC KRSNERYKKWVERLRKKAIVKIYI CCCHHHHHHHHHHHHHCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proline Imidic Peptide Bonds In Oligopeptides [C]
Specific reaction: Cis-Trans Isomerization Of Proline Imidic Peptide Bonds In Oligopeptides. [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA