Definition Akkermansia muciniphila ATCC BAA-835, complete genome.
Accession NC_010655
Length 2,664,102

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The map label for this gene is 187734766

Identifier: 187734766

GI number: 187734766

Start: 311770

End: 312705

Strand: Reverse

Name: 187734766

Synonym: Amuc_0254

Alternate gene names: NA

Gene position: 312705-311770 (Counterclockwise)

Preceding gene: 187734767

Following gene: 187734765

Centisome position: 11.74

GC content: 52.24

Gene sequence:

>936_bases
ATGCTGGTATTTTCTACGTGCTGGAATTCCCACCGTCATCAGGACGGGGAAGAAATGATTGATGAGATTCTTTCTTTGGG
TTTTGACCATGTGGAACTTTCCCACGGCATCAAGTTATCCCTTCTCCCCGGTATCATGAGGGCGGTAAAAGCCGGAAAGG
TGCAGGTGGCCGGGGTGCATAATTTTTTTCCCGCTCCGATTGACGAAGTGGGGGATTCTCCAGACAGCAGGCCTTTTACG
GCGGATTTGCTGCAGGTGCGTTCCAAGGCTATTGAATTGACGAAAAAGTCTATTGAACAGGGCGCAGCACTGGGGGCCGG
ATATATCGTGTTGCATATGGGAACGGTGGAACCCTTGGCGAAACGCACGGATACGGCTCGTTTGCAAAACCTGGCGCGTC
AGGGAATGGTGGGAACGGAATCGTTTGCCGGCACCAAGGGCGAATTTGTACGCCGCCGCAACCGCCTGGCTCCCGTTTAT
CTGGAACGGGCGCGTGAAGCTCTCCGGCAGCTCCTTCCGCAAGCCGGACAATTTGGCGTCAAGCTGGGCATTGAAGGGCG
CAGCCATTATGAGCAGGTGCCGAGTGAGGATGAAATGAATTTGTTGATGAAGGAGTTTGGAGACAATCCCTTTATTGGTT
ACTGGCATGATTTCGGGCATATTCAAAGAAAGCATAATTTGCTTATATTAAATCATGAGCAGTTTCTTCGCCGAATGTCC
TCCCATTTGATTGGAGGACATGTGAACGACGTCAAATGGCCCGCGCGGGATCATCAGGTTCCCCTGCTGGGAGGAGTAGT
TCCCTTTGAACGCCTTCTTCCTTTTTTCCCGCATGGAGTTCCGCTCGTATGGGAGCTCTCCAGCCGTGTTTCCTCAGAAG
ATATCCGTGCGGCGCGCAAATTGTGGATGGAAAAATTTCCGCAGACGCTGGCCTGA

Upstream 100 bases:

>100_bases
GTGCGGATGTCGCTGGAAGCATGACTGCCGCTGTCAAGGAGTGGATGGAAGATTGCTACACGGAACCCGGCTCCATCAGC
TCATAACAATTGATTTTTTT

Downstream 100 bases:

>100_bases
CTATCTTGTGATTGTAAATCCGGTTCCGTGGGTATAGAGTCGGCACGATGATAGATAAGACGACATCCCGCGTCATTATG
GGGCTTTTGGGAACAGCCTG

Product: Xylose isomerase domain protein TIM barrel

Products: NA

Alternate protein names: Xylose Isomerase Domain-Containing Protein

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MLVFSTCWNSHRHQDGEEMIDEILSLGFDHVELSHGIKLSLLPGIMRAVKAGKVQVAGVHNFFPAPIDEVGDSPDSRPFT
ADLLQVRSKAIELTKKSIEQGAALGAGYIVLHMGTVEPLAKRTDTARLQNLARQGMVGTESFAGTKGEFVRRRNRLAPVY
LERAREALRQLLPQAGQFGVKLGIEGRSHYEQVPSEDEMNLLMKEFGDNPFIGYWHDFGHIQRKHNLLILNHEQFLRRMS
SHLIGGHVNDVKWPARDHQVPLLGGVVPFERLLPFFPHGVPLVWELSSRVSSEDIRAARKLWMEKFPQTLA

Sequences:

>Translated_311_residues
MLVFSTCWNSHRHQDGEEMIDEILSLGFDHVELSHGIKLSLLPGIMRAVKAGKVQVAGVHNFFPAPIDEVGDSPDSRPFT
ADLLQVRSKAIELTKKSIEQGAALGAGYIVLHMGTVEPLAKRTDTARLQNLARQGMVGTESFAGTKGEFVRRRNRLAPVY
LERAREALRQLLPQAGQFGVKLGIEGRSHYEQVPSEDEMNLLMKEFGDNPFIGYWHDFGHIQRKHNLLILNHEQFLRRMS
SHLIGGHVNDVKWPARDHQVPLLGGVVPFERLLPFFPHGVPLVWELSSRVSSEDIRAARKLWMEKFPQTLA
>Mature_311_residues
MLVFSTCWNSHRHQDGEEMIDEILSLGFDHVELSHGIKLSLLPGIMRAVKAGKVQVAGVHNFFPAPIDEVGDSPDSRPFT
ADLLQVRSKAIELTKKSIEQGAALGAGYIVLHMGTVEPLAKRTDTARLQNLARQGMVGTESFAGTKGEFVRRRNRLAPVY
LERAREALRQLLPQAGQFGVKLGIEGRSHYEQVPSEDEMNLLMKEFGDNPFIGYWHDFGHIQRKHNLLILNHEQFLRRMS
SHLIGGHVNDVKWPARDHQVPLLGGVVPFERLLPFFPHGVPLVWELSSRVSSEDIRAARKLWMEKFPQTLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35057; Mature: 35057

Theoretical pI: Translated: 8.52; Mature: 8.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVFSTCWNSHRHQDGEEMIDEILSLGFDHVELSHGIKLSLLPGIMRAVKAGKVQVAGVH
CEEECCHHCCCCCCCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCEEEEEEC
NFFPAPIDEVGDSPDSRPFTADLLQVRSKAIELTKKSIEQGAALGAGYIVLHMGTVEPLA
CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
KRTDTARLQNLARQGMVGTESFAGTKGEFVRRRNRLAPVYLERAREALRQLLPQAGQFGV
HHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCE
KLGIEGRSHYEQVPSEDEMNLLMKEFGDNPFIGYWHDFGHIQRKHNLLILNHEQFLRRMS
EEECCCCHHHHHCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCEEEECHHHHHHHHH
SHLIGGHVNDVKWPARDHQVPLLGGVVPFERLLPFFPHGVPLVWELSSRVSSEDIRAARK
HHHCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCCCCCCEEEHHHHCCHHHHHHHHH
LWMEKFPQTLA
HHHHHCCHHCC
>Mature Secondary Structure
MLVFSTCWNSHRHQDGEEMIDEILSLGFDHVELSHGIKLSLLPGIMRAVKAGKVQVAGVH
CEEECCHHCCCCCCCHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHHHHCCCEEEEEEC
NFFPAPIDEVGDSPDSRPFTADLLQVRSKAIELTKKSIEQGAALGAGYIVLHMGTVEPLA
CCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHH
KRTDTARLQNLARQGMVGTESFAGTKGEFVRRRNRLAPVYLERAREALRQLLPQAGQFGV
HHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCE
KLGIEGRSHYEQVPSEDEMNLLMKEFGDNPFIGYWHDFGHIQRKHNLLILNHEQFLRRMS
EEECCCCHHHHHCCCHHHHHHHHHHCCCCCCEEEEHHHHHHHHHCCEEEECHHHHHHHHH
SHLIGGHVNDVKWPARDHQVPLLGGVVPFERLLPFFPHGVPLVWELSSRVSSEDIRAARK
HHHCCCCCCCCCCCCCCCCCCHHCCCCCHHHHHHHCCCCCCCEEEHHHHCCHHHHHHHHH
LWMEKFPQTLA
HHHHHCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA