| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is lpxA
Identifier: 187734693
GI number: 187734693
Start: 227570
End: 228349
Strand: Reverse
Name: lpxA
Synonym: Amuc_0180
Alternate gene names: 187734693
Gene position: 228349-227570 (Counterclockwise)
Preceding gene: 187734694
Following gene: 187734692
Centisome position: 8.57
GC content: 55.26
Gene sequence:
>780_bases ATGCCAGAAATACACCCAACGGCAGTAGTGCATCCTGCTGCAGAGATCGCGGATGATGTTAAAATCGGTCCCTTTTGCGT TGTCGGGGAACATGTCAAACTGGGGCCCGGCTGCGTGCTGCACAGCCATGTGGTTATAGACGGTCCTTCTTCCTTCGGCA GCGGCAACGAATTTTTCCCGTTTTCCGTCATCGGCCTGAAAAGCCAGGATTTGAAATACAAGGGAGAGCCGACTTATCTG GAAGTGGGGGATAACAACGTCTTCCGTGAAAACGCCACCATCAACCGGGCTACGGACATTGGCGGCGCAACGCGGATAGG GAATAACAACCTTTTCCTGGTTTCCTGCCATGCCGGGCACGATTGCCAGATCGGCAATCATGTGATTTTCTCCGGGTTCG CTACCGCCGCCGGCCATGTTACGGTGGGGGATTACGCCATCCTGGCGGGATGTTGCGCCGTACACCAGTTTGTGAGCATC GGGGAACATGCCATGGTGGGAGCAATGGCCCGCGTGAGCCAGGATGTCCTGCCGTACACGATCGTGGAGGGCCACCCGGC CGTAACGCGTTCCGTTAACTCCATCGGCATGCAGAGGCGCGGCTTTTCCGAAGAAGACCTGAAAGCCGTGCGCATGTGCT ATAAAAAGCTTTTCGTCAATAAAAAGCTGACCGTTCATGAAGCTCTGGAGGAACTGCGGCATTCGGGGTATGCGGAAAAT GCCTGCCTGAGGAGAATCATCCAATTCGTGGAAACTTCCGAACGGGGGTTCTGCCATTGA
Upstream 100 bases:
>100_bases GGAGGCTTATGCGGCCGCTTCCGGCCAAATGTGATAAAAAGACGGCCCTGTGGGGTTTAGGCTTTTAATCACCTGAATTT GTTTCATACTTGTTTCAGCC
Downstream 100 bases:
>100_bases ATCCATGAAAACGGGTTTTGTCTTTGACCTGGACGGGACGCTGGTGGACTCTATTCCCGGTATCGCCCGCGGCCTGAATC TGGCCTTGAAAGCGCTGGGG
Product: acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase
Products: NA
Alternate protein names: UDP-N-acetylglucosamine acyltransferase
Number of amino acids: Translated: 259; Mature: 258
Protein sequence:
>259_residues MPEIHPTAVVHPAAEIADDVKIGPFCVVGEHVKLGPGCVLHSHVVIDGPSSFGSGNEFFPFSVIGLKSQDLKYKGEPTYL EVGDNNVFRENATINRATDIGGATRIGNNNLFLVSCHAGHDCQIGNHVIFSGFATAAGHVTVGDYAILAGCCAVHQFVSI GEHAMVGAMARVSQDVLPYTIVEGHPAVTRSVNSIGMQRRGFSEEDLKAVRMCYKKLFVNKKLTVHEALEELRHSGYAEN ACLRRIIQFVETSERGFCH
Sequences:
>Translated_259_residues MPEIHPTAVVHPAAEIADDVKIGPFCVVGEHVKLGPGCVLHSHVVIDGPSSFGSGNEFFPFSVIGLKSQDLKYKGEPTYL EVGDNNVFRENATINRATDIGGATRIGNNNLFLVSCHAGHDCQIGNHVIFSGFATAAGHVTVGDYAILAGCCAVHQFVSI GEHAMVGAMARVSQDVLPYTIVEGHPAVTRSVNSIGMQRRGFSEEDLKAVRMCYKKLFVNKKLTVHEALEELRHSGYAEN ACLRRIIQFVETSERGFCH >Mature_258_residues PEIHPTAVVHPAAEIADDVKIGPFCVVGEHVKLGPGCVLHSHVVIDGPSSFGSGNEFFPFSVIGLKSQDLKYKGEPTYLE VGDNNVFRENATINRATDIGGATRIGNNNLFLVSCHAGHDCQIGNHVIFSGFATAAGHVTVGDYAILAGCCAVHQFVSIG EHAMVGAMARVSQDVLPYTIVEGHPAVTRSVNSIGMQRRGFSEEDLKAVRMCYKKLFVNKKLTVHEALEELRHSGYAENA CLRRIIQFVETSERGFCH
Specific function: Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
COG id: COG1043
COG function: function code M; Acyl-[acyl carrier protein]--UDP-N-acetylglucosamine O-acyltransferase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transferase hexapeptide repeat family. LpxA subfamily
Homologues:
Organism=Escherichia coli, GI1786378, Length=257, Percent_Identity=45.5252918287938, Blast_Score=220, Evalue=6e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): LPXA_AKKM8 (B2ULY0)
Other databases:
- EMBL: CP001071 - RefSeq: YP_001876805.1 - ProteinModelPortal: B2ULY0 - SMR: B2ULY0 - GeneID: 6275375 - GenomeReviews: CP001071_GR - KEGG: amu:Amuc_0180 - HOGENOM: HBG659295 - OMA: SSTRGIT - GO: GO:0005737 - HAMAP: MF_00387 - InterPro: IPR001451 - InterPro: IPR010137 - InterPro: IPR011004 - PIRSF: PIRSF000456 - TIGRFAMs: TIGR01852
Pfam domain/function: PF00132 Hexapep; SSF51161 Trimer_LpxA_like
EC number: =2.3.1.129
Molecular weight: Translated: 28059; Mature: 27928
Theoretical pI: Translated: 6.78; Mature: 6.78
Prosite motif: PS00101 HEXAPEP_TRANSFERASES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.5 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 3.5 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEIHPTAVVHPAAEIADDVKIGPFCVVGEHVKLGPGCVLHSHVVIDGPSSFGSGNEFFP CCCCCCCEEECCHHHHHCCCCCCCEEEECCCEECCCCEEEEEEEEEECCCCCCCCCCCCC FSVIGLKSQDLKYKGEPTYLEVGDNNVFRENATINRATDIGGATRIGNNNLFLVSCHAGH EEEEECCCCCCEECCCCCEEEECCCCEEECCCCCCCHHCCCCCEEECCCCEEEEEECCCC DCQIGNHVIFSGFATAAGHVTVGDYAILAGCCAVHQFVSIGEHAMVGAMARVSQDVLPYT CCCCCCEEEEECHHHCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEE IVEGHPAVTRSVNSIGMQRRGFSEEDLKAVRMCYKKLFVNKKLTVHEALEELRHSGYAEN EECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH ACLRRIIQFVETSERGFCH HHHHHHHHHHHCCCCCCCC >Mature Secondary Structure PEIHPTAVVHPAAEIADDVKIGPFCVVGEHVKLGPGCVLHSHVVIDGPSSFGSGNEFFP CCCCCCEEECCHHHHHCCCCCCCEEEECCCEECCCCEEEEEEEEEECCCCCCCCCCCCC FSVIGLKSQDLKYKGEPTYLEVGDNNVFRENATINRATDIGGATRIGNNNLFLVSCHAGH EEEEECCCCCCEECCCCCEEEECCCCEEECCCCCCCHHCCCCCEEECCCCEEEEEECCCC DCQIGNHVIFSGFATAAGHVTVGDYAILAGCCAVHQFVSIGEHAMVGAMARVSQDVLPYT CCCCCCEEEEECHHHCCCCEEECHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEE IVEGHPAVTRSVNSIGMQRRGFSEEDLKAVRMCYKKLFVNKKLTVHEALEELRHSGYAEN EECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCH ACLRRIIQFVETSERGFCH HHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA