Click here to switch to the map view.

The map label for this gene is oppB [H]

Identifier: 187734657

GI number: 187734657

Start: 175342

End: 176256

Strand: Reverse

Name: oppB [H]

Synonym: Amuc_0144

Alternate gene names: 187734657

Gene position: 176256-175342 (Counterclockwise)

Preceding gene: 187734658

Following gene: 187734656

Centisome position: 6.62

GC content: 59.67

Gene sequence:

>915_bases
ATGATTCTGAAACGCCTGGGGCAGGGGCTTCTGGTCCTGCTGGTGCTGGAAACTGTGACGTTTTTCCTGATACGCCTGTT
GCCGGGGCACCCCTTCATGGGGGAAAAGAAACTTCCGGAGCATGTCCTCCAGCAGCTCCAGGCCAGTTACGGGCTGGATC
AGGCTCCCCTGGTCCAGTACGGGCGTTACTGGTGGAACATGCTGGTTCATGGCGACCTGGGGCCGTCTTTGGTGAAGGAA
GGCGTCAGCGTGGCGGATATGATCGGCCAGTCATTCCCTGTTTCCCTCCAGCTTGGAGTCATAGGCATGGCTATTTCCAT
TCTGGCGGGGATTCCCGCCGGAATTGTGGCGGCACTGTACAAGAACCGGTGGATGGACTGGTGGGTGATGCTCGTTTCCA
TGGCCGGCATTTGCATTCCCGCTTTCGTCGTGGCTCCGCTGCTTGGCGTGGCGCTGGGCATGCATGTGCCCGGCTTGAGC
GTGGCCGGATGGGATTCTCCCGGTTGTGTGGTGCTTCCGGCGCTGACGCTGGGGCTGGTGAATGCCGCATATCTGGCGCG
CCTGACGCGCGGCGGCATGCTTGAAGTGCTGGGGCAGGATTTCATCCGGACGGCTCGAGCCAAGGGGGCGGGGCCTTTCC
GTACGGTTTGGAAGCACGCTTTGCGAGGCGGCCTGATTCCGGCCCTTTCCTATCTGGGGCCTGCTTTTGCCGCTATGATT
ACCGGTTCTTTTGTGGTGGAGACCTGTTTCCAGGTTCCCGGCATGGGGCAGCATTTCGTGAACGCAACCACGGACCGGGA
TTATTTCCTCATCCAGGGGCTTGTCCTGTTTTACGGCATTCTGATCGTCGCGGCCAACCTGGGTGTGGATCTGGTGCAAA
TGGCCGTCAACCCGAGATTGAGAAAGGAATCATGA

Upstream 100 bases:

>100_bases
TGCGGGGATGGCACCCCCTGCTGCTGGATAACCATTTGTTTGAGGATATCAGCCTGGACGACGCCCGGGAACATGGGAAG
GAGGCCGCGCCTTGACCAGG

Downstream 100 bases:

>100_bases
GAAAAAGAGGATGGAACAGGATGGAGGAACAGGGTTCCTCCCTGTGGAAGGACGCTTTTCTGCGTCTTTCCCGCAACCGG
GCGGCCATGTTTTCCCTGCT

Product: binding-protein-dependent transporters inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MILKRLGQGLLVLLVLETVTFFLIRLLPGHPFMGEKKLPEHVLQQLQASYGLDQAPLVQYGRYWWNMLVHGDLGPSLVKE
GVSVADMIGQSFPVSLQLGVIGMAISILAGIPAGIVAALYKNRWMDWWVMLVSMAGICIPAFVVAPLLGVALGMHVPGLS
VAGWDSPGCVVLPALTLGLVNAAYLARLTRGGMLEVLGQDFIRTARAKGAGPFRTVWKHALRGGLIPALSYLGPAFAAMI
TGSFVVETCFQVPGMGQHFVNATTDRDYFLIQGLVLFYGILIVAANLGVDLVQMAVNPRLRKES

Sequences:

>Translated_304_residues
MILKRLGQGLLVLLVLETVTFFLIRLLPGHPFMGEKKLPEHVLQQLQASYGLDQAPLVQYGRYWWNMLVHGDLGPSLVKE
GVSVADMIGQSFPVSLQLGVIGMAISILAGIPAGIVAALYKNRWMDWWVMLVSMAGICIPAFVVAPLLGVALGMHVPGLS
VAGWDSPGCVVLPALTLGLVNAAYLARLTRGGMLEVLGQDFIRTARAKGAGPFRTVWKHALRGGLIPALSYLGPAFAAMI
TGSFVVETCFQVPGMGQHFVNATTDRDYFLIQGLVLFYGILIVAANLGVDLVQMAVNPRLRKES
>Mature_304_residues
MILKRLGQGLLVLLVLETVTFFLIRLLPGHPFMGEKKLPEHVLQQLQASYGLDQAPLVQYGRYWWNMLVHGDLGPSLVKE
GVSVADMIGQSFPVSLQLGVIGMAISILAGIPAGIVAALYKNRWMDWWVMLVSMAGICIPAFVVAPLLGVALGMHVPGLS
VAGWDSPGCVVLPALTLGLVNAAYLARLTRGGMLEVLGQDFIRTARAKGAGPFRTVWKHALRGGLIPALSYLGPAFAAMI
TGSFVVETCFQVPGMGQHFVNATTDRDYFLIQGLVLFYGILIVAANLGVDLVQMAVNPRLRKES

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=302, Percent_Identity=42.3841059602649, Blast_Score=246, Evalue=9e-67,
Organism=Escherichia coli, GI1787053, Length=304, Percent_Identity=35.5263157894737, Blast_Score=181, Evalue=5e-47,
Organism=Escherichia coli, GI1789965, Length=337, Percent_Identity=32.9376854599407, Blast_Score=167, Evalue=1e-42,
Organism=Escherichia coli, GI1789888, Length=308, Percent_Identity=30.5194805194805, Blast_Score=150, Evalue=1e-37,
Organism=Escherichia coli, GI1787761, Length=333, Percent_Identity=32.4324324324324, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1787550, Length=272, Percent_Identity=27.2058823529412, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1788504, Length=290, Percent_Identity=28.9655172413793, Blast_Score=110, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32777; Mature: 32777

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILKRLGQGLLVLLVLETVTFFLIRLLPGHPFMGEKKLPEHVLQQLQASYGLDQAPLVQY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
GRYWWNMLVHGDLGPSLVKEGVSVADMIGQSFPVSLQLGVIGMAISILAGIPAGIVAALY
HHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHH
KNRWMDWWVMLVSMAGICIPAFVVAPLLGVALGMHVPGLSVAGWDSPGCVVLPALTLGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHH
NAAYLARLTRGGMLEVLGQDFIRTARAKGAGPFRTVWKHALRGGLIPALSYLGPAFAAMI
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TGSFVVETCFQVPGMGQHFVNATTDRDYFLIQGLVLFYGILIVAANLGVDLVQMAVNPRL
HHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
RKES
CCCC
>Mature Secondary Structure
MILKRLGQGLLVLLVLETVTFFLIRLLPGHPFMGEKKLPEHVLQQLQASYGLDQAPLVQY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHH
GRYWWNMLVHGDLGPSLVKEGVSVADMIGQSFPVSLQLGVIGMAISILAGIPAGIVAALY
HHHHHHHHHCCCCCHHHHHCCCHHHHHHCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHH
KNRWMDWWVMLVSMAGICIPAFVVAPLLGVALGMHVPGLSVAGWDSPGCVVLPALTLGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCHHHHHHHHHH
NAAYLARLTRGGMLEVLGQDFIRTARAKGAGPFRTVWKHALRGGLIPALSYLGPAFAAMI
HHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
TGSFVVETCFQVPGMGQHFVNATTDRDYFLIQGLVLFYGILIVAANLGVDLVQMAVNPRL
HHHHHHHHHHHCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCC
RKES
CCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]