Click here to switch to the map view.

The map label for this gene is oppC [H]

Identifier: 187734656

GI number: 187734656

Start: 174389

End: 175321

Strand: Reverse

Name: oppC [H]

Synonym: Amuc_0143

Alternate gene names: 187734656

Gene position: 175321-174389 (Counterclockwise)

Preceding gene: 187734657

Following gene: 187734655

Centisome position: 6.58

GC content: 61.09

Gene sequence:

>933_bases
ATGGAGGAACAGGGTTCCTCCCTGTGGAAGGACGCTTTTCTGCGTCTTTCCCGCAACCGGGCGGCCATGTTTTCCCTGCT
GGCGTTGGCGCTGATTGCGGCGGCCTGTTTTCTGGGTCCCCTGCTGCCGTGGCTGCCTCATCCTAATGTGCAGGATTTGT
CCCGGATTGCGGAAAGCCCTTCCTGGGACCATTGGTTCGGCACGGACCAGCTTGGGAGGGACCTGCTGGCGCGTGTCCTG
TACGGCGGCCGCATTTCCCTGCTGGTGGGAGTGGTCGCTACGGGCGTTTCCCTGGTGATTGGCGTGGCGTACGGACTGGT
TTCCGGTTATGCCGGAGGCAGGCTGGATGCCCTGATGATGCGCCTGGTGGATGTGCTTTTTGCCCTGCCGTTCATTGTGC
TGGTGATTATTTTTTCCTTGTCCGTGGAGGAGCCGGCCCGGAGGCTGACGCAGTGGGTTTCCGGCATGACGGGCTGGTCT
GTGGAAATGGTGAGCCCCATGACCGGGCTGATTCCCCTGTTCATCGCCATCGGCGCTTTGGGCTGGCTGACGCTGGCGCG
TATTGTCCGGACGCAGACGATGGAGCTGAAAGGGCAGGAGTTTGTGGAAGCTGCCCGTTCCCTGGGCATCGGTCACATGA
AGATTCTGTTCCGCCATATTGCTCCGAATTTGTTCGGGGCCGTCATCGTGTACACGACGCTGGCCGTTCCCGGCATCATG
CTGCTGGAAGCCGTCCTGTCCTTTCTGGGGCTGGGCGTGAAGGCTCCCAATTCCTCATGGGGAACGCTGATCAAGGAAGG
GGCGGACCGCATGGAGGTAAGTCCGGAATTGCTTTTGTTCCCGGCGCTCCTGTTTTCGGCTACCCTGCTGGCGCTGAATT
TCCTGGGGGACGGCCTGCGGGACGCCCTGGATCCCAAGTCCTCCAAGGACTGA

Upstream 100 bases:

>100_bases
GCATTCTGATCGTCGCGGCCAACCTGGGTGTGGATCTGGTGCAAATGGCCGTCAACCCGAGATTGAGAAAGGAATCATGA
GAAAAAGAGGATGGAACAGG

Downstream 100 bases:

>100_bases
TGTTTTTAAATAAAAATCATGAAGATTGCGTTAACGATTTCCATGCTGGTGGTCTCCAACGTTTTTATGACGTGGGCGTG
GTACGGCCATCTGAAGAAGG

Product: binding-protein-dependent transporters inner membrane component

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 310

Protein sequence:

>310_residues
MEEQGSSLWKDAFLRLSRNRAAMFSLLALALIAAACFLGPLLPWLPHPNVQDLSRIAESPSWDHWFGTDQLGRDLLARVL
YGGRISLLVGVVATGVSLVIGVAYGLVSGYAGGRLDALMMRLVDVLFALPFIVLVIIFSLSVEEPARRLTQWVSGMTGWS
VEMVSPMTGLIPLFIAIGALGWLTLARIVRTQTMELKGQEFVEAARSLGIGHMKILFRHIAPNLFGAVIVYTTLAVPGIM
LLEAVLSFLGLGVKAPNSSWGTLIKEGADRMEVSPELLLFPALLFSATLLALNFLGDGLRDALDPKSSKD

Sequences:

>Translated_310_residues
MEEQGSSLWKDAFLRLSRNRAAMFSLLALALIAAACFLGPLLPWLPHPNVQDLSRIAESPSWDHWFGTDQLGRDLLARVL
YGGRISLLVGVVATGVSLVIGVAYGLVSGYAGGRLDALMMRLVDVLFALPFIVLVIIFSLSVEEPARRLTQWVSGMTGWS
VEMVSPMTGLIPLFIAIGALGWLTLARIVRTQTMELKGQEFVEAARSLGIGHMKILFRHIAPNLFGAVIVYTTLAVPGIM
LLEAVLSFLGLGVKAPNSSWGTLIKEGADRMEVSPELLLFPALLFSATLLALNFLGDGLRDALDPKSSKD
>Mature_310_residues
MEEQGSSLWKDAFLRLSRNRAAMFSLLALALIAAACFLGPLLPWLPHPNVQDLSRIAESPSWDHWFGTDQLGRDLLARVL
YGGRISLLVGVVATGVSLVIGVAYGLVSGYAGGRLDALMMRLVDVLFALPFIVLVIIFSLSVEEPARRLTQWVSGMTGWS
VEMVSPMTGLIPLFIAIGALGWLTLARIVRTQTMELKGQEFVEAARSLGIGHMKILFRHIAPNLFGAVIVYTTLAVPGIM
LLEAVLSFLGLGVKAPNSSWGTLIKEGADRMEVSPELLLFPALLFSATLLALNFLGDGLRDALDPKSSKD

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787498, Length=309, Percent_Identity=45.9546925566343, Blast_Score=229, Evalue=1e-61,
Organism=Escherichia coli, GI1787054, Length=305, Percent_Identity=38.0327868852459, Blast_Score=190, Evalue=9e-50,
Organism=Escherichia coli, GI1787760, Length=267, Percent_Identity=31.0861423220974, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789889, Length=264, Percent_Identity=33.7121212121212, Blast_Score=139, Evalue=3e-34,
Organism=Escherichia coli, GI1789964, Length=282, Percent_Identity=33.6879432624113, Blast_Score=120, Evalue=8e-29,
Organism=Escherichia coli, GI1788505, Length=249, Percent_Identity=30.5220883534137, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI1787549, Length=310, Percent_Identity=25.8064516129032, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33571; Mature: 33571

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEQGSSLWKDAFLRLSRNRAAMFSLLALALIAAACFLGPLLPWLPHPNVQDLSRIAESP
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
SWDHWFGTDQLGRDLLARVLYGGRISLLVGVVATGVSLVIGVAYGLVSGYAGGRLDALMM
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RLVDVLFALPFIVLVIIFSLSVEEPARRLTQWVSGMTGWSVEMVSPMTGLIPLFIAIGAL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
GWLTLARIVRTQTMELKGQEFVEAARSLGIGHMKILFRHIAPNLFGAVIVYTTLAVPGIM
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLEAVLSFLGLGVKAPNSSWGTLIKEGADRMEVSPELLLFPALLFSATLLALNFLGDGLR
HHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DALDPKSSKD
HHCCCCCCCC
>Mature Secondary Structure
MEEQGSSLWKDAFLRLSRNRAAMFSLLALALIAAACFLGPLLPWLPHPNVQDLSRIAESP
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCC
SWDHWFGTDQLGRDLLARVLYGGRISLLVGVVATGVSLVIGVAYGLVSGYAGGRLDALMM
CCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
RLVDVLFALPFIVLVIIFSLSVEEPARRLTQWVSGMTGWSVEMVSPMTGLIPLFIAIGAL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
GWLTLARIVRTQTMELKGQEFVEAARSLGIGHMKILFRHIAPNLFGAVIVYTTLAVPGIM
HHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLEAVLSFLGLGVKAPNSSWGTLIKEGADRMEVSPELLLFPALLFSATLLALNFLGDGLR
HHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
DALDPKSSKD
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]