| Definition | Akkermansia muciniphila ATCC BAA-835, complete genome. |
|---|---|
| Accession | NC_010655 |
| Length | 2,664,102 |
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The map label for this gene is yfeH [C]
Identifier: 187734652
GI number: 187734652
Start: 171270
End: 172250
Strand: Reverse
Name: yfeH [C]
Synonym: Amuc_0139
Alternate gene names: 187734652
Gene position: 172250-171270 (Counterclockwise)
Preceding gene: 187734653
Following gene: 187734650
Centisome position: 6.47
GC content: 57.29
Gene sequence:
>981_bases ATGCCGGGATTCCTTGCCAAATTGGATCGCTTCACCATCGGCCTCATCGTCAGTGTGGGCGCGGGAATTCTGGTTCCCTG TTCCGGAGTATGGGATACAGTGTTCAGCCGCCTGAGCGATGCAGCCATCGTTCTGCTTTTTTTCCTGTACGGGGCCAAGC TTTCCCGCCGTTCCGTATGGGAAGGGTTGATGCACTGGCGCCTTCAGGGGCTGGTGGCTGCGAGCACCTTTGTTATTTTC CCCCTGCTGGGTATATTCAGCATGCCCTTGTGGAATAGTGTGCTGGGGCCGGATTTGTGCATGGGAATGCTGTATGTGTG CATGCTGCCTTCCACCGTGCAGTCCAGCATAGCGTTCACTTCCATGGCGGGCGGCAATGTGGCCGCGGCCATTTGCTCCG CTTCCGTTTCCAGCCTGCTGGGGGTGTTCCTCACCCCCTTGCTGGTGGGGCTGGTGTGGTCCCGCGGAGGGGAAGGGGGC GTGGATTTTTCCACTTTCCTGAACATCTGCTATATTATTCTGGTGCCTTTTGTGGCCGGCCAGTTCGCCCAGCGCTGGAT TGGCAAATGGGTAGTCACGCACCGGAACCTCACTTCCTGGACAGACCACAGCACCATCTGGCTGGTTATTTACACGGCAT TCAGCCATGCGATGATTAACGGCGTATGGAAAAATCTGCCCTGGCTTTCCCTGGTGGAGGTGCTGGCTTTTTGCGGCCTC CTGCTGGCCGCGGCCCTGTGGCTGACGGCTTTCCTTTCACGCAGGCTCCGTTTTTCCCGCGAGGACCGCATTGCGATTAT TTTCTGCGGCTCCAAAAAGAGCCTGGCTACCGGCATTCCGATGATGAACGTGATTTTTGCCGGAGCCCCCATCGGGCTGC TGGTGATTCCCATCATGGTGTTCCACCAGCTCCAGTTGATGGTTTGTTCCTTCCTGGCCCGGAAGTGGGCGAAGGACGTG GGAAAGGGAGAACAACTTTAA
Upstream 100 bases:
>100_bases TTTGGAACTGGCTCCGGGCAGCATCCTGCGCCTGAGCAAGAAGCATGCTGTGCGTTTCAAATAGAACGCCGGAGGCGGCA TTTACCTTTTTTCCTTCTCC
Downstream 100 bases:
>100_bases GATGGCTTCTGTTTGCCTGACCTCTCAATGTCCGGTCAGGCGCAGGACTCCGTCGTATTGCATGTCCCGGCCCGGAACAA TGATGTGGTTGCCGCGGGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 325
Protein sequence:
>326_residues MPGFLAKLDRFTIGLIVSVGAGILVPCSGVWDTVFSRLSDAAIVLLFFLYGAKLSRRSVWEGLMHWRLQGLVAASTFVIF PLLGIFSMPLWNSVLGPDLCMGMLYVCMLPSTVQSSIAFTSMAGGNVAAAICSASVSSLLGVFLTPLLVGLVWSRGGEGG VDFSTFLNICYIILVPFVAGQFAQRWIGKWVVTHRNLTSWTDHSTIWLVIYTAFSHAMINGVWKNLPWLSLVEVLAFCGL LLAAALWLTAFLSRRLRFSREDRIAIIFCGSKKSLATGIPMMNVIFAGAPIGLLVIPIMVFHQLQLMVCSFLARKWAKDV GKGEQL
Sequences:
>Translated_326_residues MPGFLAKLDRFTIGLIVSVGAGILVPCSGVWDTVFSRLSDAAIVLLFFLYGAKLSRRSVWEGLMHWRLQGLVAASTFVIF PLLGIFSMPLWNSVLGPDLCMGMLYVCMLPSTVQSSIAFTSMAGGNVAAAICSASVSSLLGVFLTPLLVGLVWSRGGEGG VDFSTFLNICYIILVPFVAGQFAQRWIGKWVVTHRNLTSWTDHSTIWLVIYTAFSHAMINGVWKNLPWLSLVEVLAFCGL LLAAALWLTAFLSRRLRFSREDRIAIIFCGSKKSLATGIPMMNVIFAGAPIGLLVIPIMVFHQLQLMVCSFLARKWAKDV GKGEQL >Mature_325_residues PGFLAKLDRFTIGLIVSVGAGILVPCSGVWDTVFSRLSDAAIVLLFFLYGAKLSRRSVWEGLMHWRLQGLVAASTFVIFP LLGIFSMPLWNSVLGPDLCMGMLYVCMLPSTVQSSIAFTSMAGGNVAAAICSASVSSLLGVFLTPLLVGLVWSRGGEGGV DFSTFLNICYIILVPFVAGQFAQRWIGKWVVTHRNLTSWTDHSTIWLVIYTAFSHAMINGVWKNLPWLSLVEVLAFCGLL LAAALWLTAFLSRRLRFSREDRIAIIFCGSKKSLATGIPMMNVIFAGAPIGLLVIPIMVFHQLQLMVCSFLARKWAKDVG KGEQL
Specific function: Unknown
COG id: COG0385
COG function: function code R; Predicted Na+-dependent transporter
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To E.coli yfeH [H]
Homologues:
Organism=Homo sapiens, GI71725371, Length=338, Percent_Identity=28.9940828402367, Blast_Score=113, Evalue=3e-25, Organism=Escherichia coli, GI1788749, Length=320, Percent_Identity=50, Blast_Score=275, Evalue=2e-75, Organism=Saccharomyces cerevisiae, GI6323677, Length=336, Percent_Identity=21.1309523809524, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002657 - InterPro: IPR016833 [H]
Pfam domain/function: PF01758 SBF [H]
EC number: NA
Molecular weight: Translated: 35675; Mature: 35544
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGFLAKLDRFTIGLIVSVGAGILVPCSGVWDTVFSRLSDAAIVLLFFLYGAKLSRRSVW CCCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH EGLMHWRLQGLVAASTFVIFPLLGIFSMPLWNSVLGPDLCMGMLYVCMLPSTVQSSIAFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHH SMAGGNVAAAICSASVSSLLGVFLTPLLVGLVWSRGGEGGVDFSTFLNICYIILVPFVAG HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH QFAQRWIGKWVVTHRNLTSWTDHSTIWLVIYTAFSHAMINGVWKNLPWLSLVEVLAFCGL HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LLAAALWLTAFLSRRLRFSREDRIAIIFCGSKKSLATGIPMMNVIFAGAPIGLLVIPIMV HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHCCHHHHHHHCCCCHHHHHHHHHH FHQLQLMVCSFLARKWAKDVGKGEQL HHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure PGFLAKLDRFTIGLIVSVGAGILVPCSGVWDTVFSRLSDAAIVLLFFLYGAKLSRRSVW CCHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH EGLMHWRLQGLVAASTFVIFPLLGIFSMPLWNSVLGPDLCMGMLYVCMLPSTVQSSIAFT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHHH SMAGGNVAAAICSASVSSLLGVFLTPLLVGLVWSRGGEGGVDFSTFLNICYIILVPFVAG HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHH QFAQRWIGKWVVTHRNLTSWTDHSTIWLVIYTAFSHAMINGVWKNLPWLSLVEVLAFCGL HHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LLAAALWLTAFLSRRLRFSREDRIAIIFCGSKKSLATGIPMMNVIFAGAPIGLLVIPIMV HHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHCCHHHHHHHCCCCHHHHHHHHHH FHQLQLMVCSFLARKWAKDVGKGEQL HHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 10984043; 1849605 [H]