| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is leuO
Identifier: 187734241
GI number: 187734241
Start: 75337
End: 76281
Strand: Direct
Name: leuO
Synonym: SbBS512_E0069
Alternate gene names: 187734241
Gene position: 75337-76281 (Clockwise)
Preceding gene: 187732583
Following gene: 187734215
Centisome position: 1.63
GC content: 45.5
Gene sequence:
>945_bases ATGCCAGAGGTACAAACAGATCATTCAGAGACGGCGGAGTTAAGCAAGCCACAGCTACGCATGGTCGATCTCAACTTATT AACCGTTTTCGATGCCGTGATGCAGGAGCAAAACATTACCCGTGCCGCTCATGTTCTGGGTATGTCGCAACCTGCGGTCA GTAACGCTGTTGCACGCCTGAAGGTGATGTTTAATGACGAGCTTTTTGTTCGTTATGGCCGTGGTATTCAACCGACTGCT CGCGCATTTCAACTTTTTGGTTCAGTTCGCCAGGCATTGCAACTAGTACAAAATGAATTGCCTGGTTCAGGTTTTGAACC CGCGAGTAGTGAACGTGTATTTCATCTTTGTGTTTGCAGCCCGTTAGACAGCATTCTGACCTCGCAGATTTATAATCACA TTGAGCAGATTGCGCCAAATATACATGTTATGTTCAAGTCTTCATTAAATCAGAACACTGAACATCAGCTGCGTTATCAG GAAACGGAGTTTGTGATTAGTTATGAAGACTTCCATCGTCCTGAATTTACCAGCGTGCCATTATTTAAAGATGAAATGGT GCTGGTAGCCAGCAAAAATCATCCAACAATTAAAGGCCCGTTACTGAAACATGATGTTTATAACGAACAACATGCGGCGG TTTCGCTCGATCGTTTCGCGTCATTTAGTCAACCTTGGTATGACACGGTAGATAAGCAAGCCAGTATCGCGTATCAGGGC ATGGCAATGATGAGCGTACTTAGCGTGGTGTCGCAAACGCATTTGGTCGCTATTGCGCCGCGTTGGCTGGCTGAAGAGTT CGCTGAATCCTTAGAATTACAGGTATTACCGCTGCTGTTAAAACAAAACAGCAGAACCTGTTATCTCTCATGGCATGAAG CTGCCGGGCGCGATAAAGGCCATCAGTGGATGGAAGAACAATTAGTCTCAATTTGCAAACGCTAA
Upstream 100 bases:
>100_bases CTTTTTCTTATTTTATATGCATGATAAATCATATTCTTCAGGATTATTTCTCTGCATTCCAATAAGGGAAAGGGAGTTAA GTGTGACAGTGGAGTTAAGT
Downstream 100 bases:
>100_bases CTGAATGCAGAATAGGTCAGACATGAATGTCTGGTTTATTCTGCATTTTTTATTGAATGTAGAATTTTATTCTGAATGTG TGGGCTCTCTATTTTAGGAT
Product: leucine transcriptional activator
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 314; Mature: 313
Protein sequence:
>314_residues MPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTA RAFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQ ETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQASIAYQG MAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLLLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR
Sequences:
>Translated_314_residues MPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTA RAFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQ ETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQASIAYQG MAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLLLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR >Mature_313_residues PEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTAR AFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQE TEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQASIAYQGM AMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLLLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]
Homologues:
Organism=Escherichia coli, GI87081684, Length=314, Percent_Identity=99.3630573248408, Blast_Score=649, Evalue=0.0, Organism=Escherichia coli, GI87081766, Length=277, Percent_Identity=25.9927797833935, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1786820, Length=286, Percent_Identity=24.4755244755245, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI157672245, Length=295, Percent_Identity=23.0508474576271, Blast_Score=65, Evalue=4e-12,
Paralogues:
None
Copy number: 825 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000847 - InterPro: IPR005119 - InterPro: IPR011991 [H]
Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]
EC number: NA
Molecular weight: Translated: 35701; Mature: 35570
Theoretical pI: Translated: 6.18; Mature: 6.18
Prosite motif: PS50931 HTH_LYSR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARL CCCCCCCCCHHHHCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH KVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCS HHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC PLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVP HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHEEECCEEEEEHHHCCCCCCCCCC LFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQASIAYQG CCCCCEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH MAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLLLKQNSRTCYLSWHEAAGRDKG HHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCH HQWMEEQLVSICKR HHHHHHHHHHHHCC >Mature Secondary Structure PEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAHVLGMSQPAVSNAVARL CCCCCCCCHHHHCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHH KVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPGSGFEPASSERVFHLCVCS HHEECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECC PLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQETEFVISYEDFHRPEFTSVP HHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHEEECCEEEEEHHHCCCCCCCCCC LFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDRFASFSQPWYDTVDKQASIAYQG CCCCCEEEEECCCCCCCCCCCHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH MAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVLPLLLKQNSRTCYLSWHEAAGRDKG HHHHHHHHHHHHHHEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCH HQWMEEQLVSICKR HHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3413113; 1630901; 9278503; 3519576 [H]