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The map label for this gene is yddB [H]

Identifier: 187733928

GI number: 187733928

Start: 1599430

End: 1601802

Strand: Reverse

Name: yddB [H]

Synonym: SbBS512_E1759

Alternate gene names: 187733928

Gene position: 1601802-1599430 (Counterclockwise)

Preceding gene: 187734106

Following gene: 187730507

Centisome position: 34.7

GC content: 45.6

Gene sequence:

>2373_bases
ATGAAGCGAGTTCTTATTCCTGGCGTCATTTTATGTGGCGCTGATGTGGCGCAGGCCGTCGATGACAAAAACATGTACAT
GCATTTTTTTGAAGAGATGACGGTCTATGCTCCTGTCCCTGTACCCGTAAACGGCAACACGCATTACACCAGTGAAAGCA
TCGAGCGTTTACCGACCGGGAATGGCAATATCAGCGATCTGCTGAGAACCAACCCTGCGGTACGCATGGATTCAACGCAA
AGTACCTCGTTGAACCAGGGAGATATTCGCCCTGAGAAAATCTCTATTCACGGTGCGTCGCCCTACCAGAATGCCTATTT
GATTGACGGTATTAGTGCAACTAATAACCTGAACCCAGCGAATGAGTCCGATGCCAGTAGTGCAACCAATATTAGCGGGA
TGTCACAGGGGTATTATCTTGATGTCAGCTTACTGGACAATGTGACGCTTTATGACAGTTTTGTGCCGGTTGAATTTGGT
CGCTTCAATGGCGGGGTAATTGATGCAAAGATCAAACGCTTCAACGCTGATGATAGCAAGGTGAAATTGGGTTATCGCAC
TACGCGTTCGGACTGGTTAACATCGCATATCGATGAGAATAACAAGAGCGCATTTAATCAAGGTTCTTCAGGAAGTACTT
ATTTCTCTCCAGATTTTAAAAAGAACTTTTATACCTTGTCGTTTAATCAGGAGCTGGCTGATAACTTTGGCGTTACCGCC
GGTTTATCGCGCCGCCAGTCTGATATCACCCGCGCGGATTATGTTTCGAATGACGGCATTGTCGCCGGTCGGGCACAGTA
TAAAAACGTTATCGATACTGCATTGAGCAAATTTACCTGGTTTGCCAGCGACCGCTTTACCCACGATTTAACCTTAAAAT
ATACCGGCTCCAGCCGTGATTATAATACCAGCACCTTCCCGCAGTCTGATCGCGAAATGGGTAATAAATCCTATGGTCTT
GCATGGGATATGGATACGCAACTCGCATGGGCCAAACTACGTACCACCGTTGGTTGGGATCATATTAGTGATTATACCCG
TCACGATCATGACATCTGGTACACCGAACTTTCATGTACATATGGTGATATTACAGGGCGTTGTACCCGTGGCGGATTAG
GACACATTTCCCAGGCTGTAGATAATTACACCTTCAAAACACGCCTGGACTGGCAAAAATTCGCCGTGGGTGATGTTTCG
CATCAACCCTACTCCGGCGCGGAATACATCTATTCCGATGCATGGACTGAACGCCATAACCAGTCTGAATCCTATGTGAT
TAATGCTGCAGGAAAGAAAACTAACCATACCATTTACCATAAAGGTAAAGGCAGCCTAGGAATTGACAACTACACGCTGT
ATATGGCGGATCACATTAGCTGGAGGAATGTGTCGTTAATGCCCGGTGTGCGTTATGACTATGACAACTATCTGTCAAAC
CACAATATCTCCCCGCGCTTTATGACGGAATGGGATATTTTTGCTGATCAAACCTCAATGATTACCGCCGGTTATAACCG
TTACTATGGCGGGAATATTCTTGATATGGGATTACGTGATATCCGCAATAGCTGGACGGAATCGGTATCAGGTAATAAAA
CCCTGACGCGTTATCAGAATTTGAAAACGCCTTATAACGATGAACTGGCAATGGGATTGCAGCAAAAAATCGGTAAGAAC
GTTATTGCACGCGCAAACTATGTTTACCGTGCAGCGCATGATCAAATCAGCAAAAGCAGTCGTACCGACAGCGCGACTAA
AACCACCATTACTGAATATAACAACGATGGCAAAACCAAAACGCATTCGTTTAACCTCAGTTTTGAACTGGCCGAACCCC
TGCATATCCGCCAGGTAGATATTAACCCGCAAATTGTCTTTAGCTATATCAAGAGCAAGGGCAACTTGTCGTTAAACAAT
GGTTATGAGGAGAGCAATACCGGTGATAACCAGGTGGTTTATAACGGTAATCTGGTCTCTTACGATAGCGTTCCAGTGGC
AGATTTTAATAACCCATTAAAGATCTCCTTAAACATGGATTTCACGCATCAACCGAGCGGGTTAGTGTGGGCGAATACGC
TGGCCTGGCAAGAAGCGCGTAAAGCTCGCATTATCCTTGGTAAGACAAATGCGCAATACATCAGCGAATATTCAGATTAC
AAGCAGTATGTTGACGAAAAACTGGATAGCAGCCTGACCTGGGACACCCGCTTGTCCTGGACGCCACAATTTCTGAAACA
ACAAAACCTGACGATCAGTGCCGATATTCTCAATGTACTGGATAGCAAAACCGCTGTTGATACAACGAATACCGGTGTGG
CGACCTACGCCAGTGGCCGTACTTTCTGGCTTGATGTCAGCATGAAATTTTAA

Upstream 100 bases:

>100_bases
ACACATCAACCCGGTGTCTGGAACCTGGCCGATGATATTTGTGACATTAGCGCGGTTTTATAAAAACAATAAAAGCCCTG
CTGTACGGAGATATAAATAA

Downstream 100 bases:

>100_bases
TAGTTCGGATTTTACTTAACCGGATAAATTCGCCCGGTTTTCGCATGGAGATAATTATGAGAAACCTCTGTTTCTTACTG
ACGTTAGTGGCAACTCTGTT

Product: TonB-dependent receptor

Products: NA

Alternate protein names: CDS103 [H]

Number of amino acids: Translated: 790; Mature: 790

Protein sequence:

>790_residues
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGL
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVS
HQPYSGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIGKN
VIARANYVYRAAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNN
GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF

Sequences:

>Translated_790_residues
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGL
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVS
HQPYSGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIGKN
VIARANYVYRAAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNN
GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF
>Mature_790_residues
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQ
STSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGL
AWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVS
HQPYSGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIGKN
VIARANYVYRAAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNN
GYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1369 [H]

Homologues:

Organism=Escherichia coli, GI1787771, Length=790, Percent_Identity=98.7341772151899, Blast_Score=1620, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531 [H]

Pfam domain/function: PF07715 Plug [H]

EC number: NA

Molecular weight: Translated: 89089; Mature: 89089

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCHHHHHHCCCHHHHHHHHCCEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA
CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSK
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEEEECCCCCCE
VKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
EEEEEEECCHHHHHHHCCCCCCHHCCCCCCCCEEECCCCCCCEEEEEECHHHHHHCCCCC
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD
CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC
YNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT
CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE
YGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVSHQPYSGAEYIYSDAWTERHN
ECCCCCCCCCCCHHHHHHHHHCCEEEEECCHHHEEECCCCCCCCCCCCCEECCHHHHHCC
QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQN
CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHH
LKTPYNDELAMGLQQKIGKNVIARANYVYRAAHDQISKSSRTDSATKTTITEYNNDGKTK
CCCCCCHHHHHHHHHHHCHHHHHHCCEEEEHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
THSFNLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS
EEEEEEEEEECCCEEEEEECCCHHHHHEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEE
YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
ECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHCCCEEEEEECCCHHHHHHHHHH
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGR
HHHHHHHHCCCCEECCCCCCCHHHHHHCCCEEEHHHHHHHCCCCEECCCCCCEEEEECCE
TFWLDVSMKF
EEEEEEEECC
>Mature Secondary Structure
MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVNGNTHYTSESIERLPTG
CCCEECCCEEEECCHHHHHHCCCHHHHHHHHCCEEEECCEEECCCCCCCCHHHHHHCCCC
NGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPYQNAYLIDGISATNNLNPA
CCCHHHHHHCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEECCCCCCCCCCC
NESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFGRFNGGVIDAKIKRFNADDSK
CCCCCCCCCCCCCCCCCEEEEEEEECCEEEEECCCCEEECCCCCCEEEEEEEECCCCCCE
VKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPDFKKNFYTLSFNQELADNFGVTA
EEEEEEECCHHHHHHHCCCCCCHHCCCCCCCCEEECCCCCCCEEEEEECHHHHHHCCCCC
GLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALSKFTWFASDRFTHDLTLKYTGSSRD
CCCHHHHCCCHHHCCCCCCEEECHHHHHHHHHHHHHHHEEEECCCEEEEEEEEECCCCCC
YNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLRTTVGWDHISDYTRHDHDIWYTELSCT
CCCCCCCCCHHHCCCCCCCEEECCCCHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEEEEE
YGDITGRCTRGGLGHISQAVDNYTFKTRLDWQKFAVGDVSHQPYSGAEYIYSDAWTERHN
ECCCCCCCCCCCHHHHHHHHHCCEEEEECCHHHEEECCCCCCCCCCCCCEECCHHHHHCC
QSESYVINAAGKKTNHTIYHKGKGSLGIDNYTLYMADHISWRNVSLMPGVRYDYDNYLSN
CCCCEEEEECCCCCCCEEEECCCCCCCCCCEEEEEEECCCCCCEEECCCCCCCHHHHHCC
HNISPRFMTEWDIFADQTSMITAGYNRYYGGNILDMGLRDIRNSWTESVSGNKTLTRYQN
CCCCCCEEEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEHHHHH
LKTPYNDELAMGLQQKIGKNVIARANYVYRAAHDQISKSSRTDSATKTTITEYNNDGKTK
CCCCCCHHHHHHHHHHHCHHHHHHCCEEEEHHHHHHHHCCCCCCCCEEEEEEECCCCCCE
THSFNLSFELAEPLHIRQVDINPQIVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVS
EEEEEEEEEECCCEEEEEECCCHHHHHEEHHCCCCEEECCCCCCCCCCCCEEEECCCEEE
YDSVPVADFNNPLKISLNMDFTHQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDY
ECCCCCCCCCCCEEEEEEECCCCCCCCEEEEEHHHHHHCCCEEEEEECCCHHHHHHHHHH
KQYVDEKLDSSLTWDTRLSWTPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGR
HHHHHHHHCCCCEECCCCCCCHHHHHHCCCEEEHHHHHHHCCCCEECCCCCCEEEEECCE
TFWLDVSMKF
EEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]