| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is yciQ [H]
Identifier: 187734007
GI number: 187734007
Start: 1361615
End: 1363510
Strand: Direct
Name: yciQ [H]
Synonym: SbBS512_E1492
Alternate gene names: 187734007
Gene position: 1361615-1363510 (Clockwise)
Preceding gene: 187733520
Following gene: 187731466
Centisome position: 29.5
GC content: 47.15
Gene sequence:
>1896_bases ATGGCAGGGAAGTTTCGCTGCATTTTGCTGTTGATAGCAGGGCTGTTTGTATCATCTCTAAGTTATGCAGAAAACCCGGA GATCCCTTCTTATGAAGAAGGGATCTCGCTCTTTGATGTTGAAGCCACTCTGCAACCGGATGGGGTGCTCGACATCAAAG AAAATATTCATTTTCAGGCGCGAAATCAGCAGATTAAGCACGGATTTTATCGTGATTTACCACGACTCTGGATGCAGCCT GATGGGGACGCTGCACTGCTGAACTATCATATTGTTGGCGTCACTCGTGATGGTATTCCTGAACCCTGGCATCTTGACTG GCATATCGGGTTAATGAGTATTGTCGTGGGCGATAAACAACGTTTCTTGCCTCAAGGCGACTATCATTATCAAATTCATT ATCAGGTTAAAAATGCTTTCCTGCGTGAGGGAGATTCAGATCTGTTAATCTGGAACGTGACTGGTAACCACTGGCCGTTT GAAATCTATAAGACCCGATTTTCACTCAAGTTCCCTGATATCGCGGGTAATCCATTTAGCGAAATCGATCTCTTTACTGG AGAAGAGGGCGACACATATCGAAATGGCCGCATCCTTGAGGACGGAAGAATTGAATCCCGCGATCCGTTTTATCGAGAAG ATTTCACGGTACTCTACCGCTGGCCTCACGCGTTACTTAGCAATGCCCCGGCTCCACAAACGACGAATATTTTCAGCCAT CTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTATTCCTGGTTTGTGGATGGTTATATCTCTGGAA GCGCAGGCCGCAATTTACGCCGGTAGATGTGATTGAAACCGATGTCATTCCGCCAGATTACACGCCCGGCATGTTACGTC TCGATGCGAAGCTGGTTTACGACGATAAAGGTTTCTGTGCCGATATCGTAAATCTGATCGTGAAGGGAAAAATTCATCTG GAAGATCAGTATGATAAGAACCAGCAAATCCTGATTTGTGTTAATGAAGGCGCGACCAGAAATAATGAGGTATTACTGCC CGCAGAGCAGTTATTACTGGAAGCGTTATTTCGTAAAGGCGATAAGGTCGTTCTTACGGGGAGACGCAACAGAGTCTTAC GCAGGGCATTTTTACGGATGCAGAAATTTTATCTGCCGCGTAAAAAGTCTTTGTTTTACCGGCCTGATACGTTTTTGCAA TGGGGTGGACTGGCAATATTGGCGATCATTCTCTACGGTAACCTGAGTCCCGTAGGTTGGGCAGGAATGAGTCTGGTAGG CGATATGTTTATTATGATCTGCTGGATTATTCCTTTTTTATTTTGTTCCCTTGAGCTTTTGTTTGCCCGCGATGATGACA AGCCTTGCGTTAATCGTGCAATCATCACTTTGTTTTTACCACTGATTTGTTCAGGCGTGGCCTTCTATTCTCTCTATATC AATGTCGGAGATGTATTCTTTTACTGGTATATGCCAGCGGGTTATTTTAGCGCTGTTTGCCTGACCGGTTATCTCACTGG CATGGGGTATATTTTTCTGCCAAAGTTTACCCAAACTGGGCAGCAACGTTATGCCCGCGGTGAAGCTATCGTTAACTATC TTGCGCGTAAAGAGGCAGCAACACACAGTGGACGTCGGCGGAAAGGGGAAACACGGAAACTGGATTACGCGTTGCTAGGT TGGGCTATATCGGCAAATTTGGGGAGGGAATGGGCGTTACGCATTGCCCCTTCGCTTTCTTCGGCGATTCGCGCTCCAGA GATTGCCCGTAACGGCGTTTTATTCTCATTACAGACGCACCTAAGTTGCGGGGCCAATACCAGTTTGTTGGGGCGAAGTT ATTCCGGTGGTGGTGCTGGCGGCGGCGCGGGTGGCGGAGGCGGTGGTGGCTGGTAA
Upstream 100 bases:
>100_bases GGTCATTGATCTTACCGATGATACGCCGGTCGTGGTGCGTGAAGGCGTGGGTGATGTGAAGCCTTTCTTATAACAAATTG CGTTCCACGGATGGAAGACT
Downstream 100 bases:
>100_bases TTAAGCTGATGTTAATCGAAACAAGCTTTAACCATAAAGATAGTGTAGTATGTTGCGCCTCAAAGCCAGGCCGATAAACG TCGAGTCGTTTACTTAAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 631; Mature: 630
Protein sequence:
>631_residues MAGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQP DGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPF EIYKTRFSLKFPDIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNAPAPQTTNIFSH LLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHL EDQYDKNQQILICVNEGATRNNEVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLFYRPDTFLQ WGGLAILAIILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRAIITLFLPLICSGVAFYSLYI NVGDVFFYWYMPAGYFSAVCLTGYLTGMGYIFLPKFTQTGQQRYARGEAIVNYLARKEAATHSGRRRKGETRKLDYALLG WAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAGGGGGGGW
Sequences:
>Translated_631_residues MAGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQP DGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPF EIYKTRFSLKFPDIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNAPAPQTTNIFSH LLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHL EDQYDKNQQILICVNEGATRNNEVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLFYRPDTFLQ WGGLAILAIILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRAIITLFLPLICSGVAFYSLYI NVGDVFFYWYMPAGYFSAVCLTGYLTGMGYIFLPKFTQTGQQRYARGEAIVNYLARKEAATHSGRRRKGETRKLDYALLG WAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAGGGGGGGW >Mature_630_residues AGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPD GDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFE IYKTRFSLKFPDIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNAPAPQTTNIFSHL LLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLE DQYDKNQQILICVNEGATRNNEVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLFYRPDTFLQW GGLAILAIILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRAIITLFLPLICSGVAFYSLYIN VGDVFFYWYMPAGYFSAVCLTGYLTGMGYIFLPKFTQTGQQRYARGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGW AISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAGGGGGGGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1787522, Length=615, Percent_Identity=97.7235772357724, Blast_Score=1210, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR018702 [H]
Pfam domain/function: PF09972 DUF2207 [H]
EC number: NA
Molecular weight: Translated: 71415; Mature: 71284
Theoretical pI: Translated: 7.89; Mature: 7.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQA CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEEEEEECCCCEEECCCCCEEEE RNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQ CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEHEEEEEEECCHH RFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFEIYKTRFSLKFPDIAGNPFS HCCCCCCEEEEEEEEEEHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCC EIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNAPAPQTTNIFSH CEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCCHHHHHHH LLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVY HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEE DDKGFCADIVNLIVKGKIHLEDQYDKNQQILICVNEGATRNNEVLLPAEQLLLEALFRKG CCCCHHHHHHHHHHCCEEEECCCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHCCC DKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLFYRPDTFLQWGGLAILAIILYGNLSPVGW CEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCHHHHHHHHHHCCCCCCCH AGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRAIITLFLPLICSGVAFYSLYI HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEHEEE NVGDVFFYWYMPAGYFSAVCLTGYLTGMGYIFLPKFTQTGQQRYARGEAIVNYLARKEAA ECCCEEEEEECCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH THSGRRRKGETRKLDYALLGWAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTH HCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCHHHHHCCCHHHHCCEEEEEEEC LSCGANTSLLGRSYSGGGAGGGAGGGGGGGW CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure AGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATLQPDGVLDIKENIHFQA CCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCEEEEEEEEECCCCEEECCCCCEEEE RNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEPWHLDWHIGLMSIVVGDKQ CCHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEEEECCCCCCCEEEEEEHEEEEEEECCHH RFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPFEIYKTRFSLKFPDIAGNPFS HCCCCCCEEEEEEEEEEHHHHHCCCCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCCCC EIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVLYRWPHALLSNAPAPQTTNIFSH CEEEEECCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECHHHHHCCCCCCCHHHHHHH LLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVDVIETDVIPPDYTPGMLRLDAKLVY HHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCEEEEEEEEEE DDKGFCADIVNLIVKGKIHLEDQYDKNQQILICVNEGATRNNEVLLPAEQLLLEALFRKG CCCCHHHHHHHHHHCCEEEECCCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHHCCC DKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLFYRPDTFLQWGGLAILAIILYGNLSPVGW CEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEECCCCHHHHCHHHHHHHHHHCCCCCCCH AGMSLVGDMFIMICWIIPFLFCSLELLFARDDDKPCVNRAIITLFLPLICSGVAFYSLYI HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEHEEE NVGDVFFYWYMPAGYFSAVCLTGYLTGMGYIFLPKFTQTGQQRYARGEAIVNYLARKEAA ECCCEEEEEECCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH THSGRRRKGETRKLDYALLGWAISANLGREWALRIAPSLSSAIRAPEIARNGVLFSLQTH HCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCHHHHHCCCHHHHCCEEEEEEEC LSCGANTSLLGRSYSGGGAGGGAGGGGGGGW CCCCCCCHHCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9097039; 9278503 [H]