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The map label for this gene is yfdE [H]

Identifier: 187732857

GI number: 187732857

Start: 2542720

End: 2543865

Strand: Reverse

Name: yfdE [H]

Synonym: SbBS512_E2740

Alternate gene names: 187732857

Gene position: 2543865-2542720 (Counterclockwise)

Preceding gene: 187732206

Following gene: 187733087

Centisome position: 55.11

GC content: 45.38

Gene sequence:

>1146_bases
ATGACAAATAATGAAAGCAAAGGGCCGTTTGAAGGCTTATTAGTTATCGATATGACACATGTCCTTAATGGACCTTTCGG
AACTCAACTTCTTTGTAATATGGGCGCAAGGGTAATTAAAGTTGAGCCGCCGGGTCATGGTGATGATACCCGCACATTTG
GTCCCTATGTGGATGGACAGTCACTCTATTACAGTTTTATTAATCATGGCAAAGAGAGTGTGGTTCTTGATTTAAAGAAT
GATTACGATAAAAGTATATTTATAAATATGCTCAAACAAGCTGATGTATTAGCTGAGAATTTTCGCCCAGGTACAATGGA
AAAACTGGGGTTTTCATGGGAAACGCTTCAAGAAATCAACCCGAGCCTCATATATGCTTCATCGTCAGGTTTCGGACATA
CCGGTCCGCTAAAAGATGCTCCTGCCTACGATACCATCATTCAGGCAATGAGCGGGATAATGATGGAAACAGGATATCCT
GATGCTCCGCCAGTGCGCGTTGGTACATCTCTTGCGGATCTATGCGGCGGTGTCTATTTATTCAGCGGAATAGTGAGTGC
ACTTTATGGCCGCGAAAAGAGCCAGAGAGGGGCGCATGTCGATATAGCGATGTTTGATGCCACGCTGAGTTTTCTGGAGC
ATGGTCTGATGGCATATATCGCGACAGGGAAGTCACCACAACGTCTGGGAAATCGCCATCCCTACATGGCACCTTTTGAT
GTTTTCAATACTCAGGATAAGCCGATTACGATTTGTTGTGGTAATGACAAGCTTTTTTCTGCGTTATGCCAGGCACTGGA
GCTTACGGAACTGGTTAATGATCCCCGATTTAGCAGCAATATTTTACGCGTACAAAACCAGGCTATTCTTAAACAATATA
TTGAGCGGACGTTAAAAACGCAGGCAGCTGAAGTTTGGTTAGCCAGAATACATGAAGTTGGTGTACCCGTCGCGCCGTTA
TTAAGTGTGGCTGAGGCCATTAAATTGCCACAAACTCAGGCGAGAAATATGTTGATTGAAGCCGGGGGAATAATGATGCC
GGGTAATCCGATAAAAATCAGCGGCTGCGCGGACCCGCATGTTATGCCGGGAGCGGCAACGCTCGACCAGCATGGGGAAC
AAATTCGCCAGGAGTTCTCATCATAA

Upstream 100 bases:

>100_bases
ATTTATGTCAGTCGACTGGTTTCATAATTAATCATGTTATTGATTTTACATAAATGCCGAAGTGTCTTTTCACCTTCGGC
TTTTTTCAAGGCATAAGCAA

Downstream 100 bases:

>100_bases
ATGTAAGATGTGCTGGTAAATAGCTCCCACATTTGAACATTGTGGGAGCCGCTATTTAGTCATTTTTCTGACAGAAAACA
GCAATCTCCTGGTCCAGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 380

Protein sequence:

>381_residues
MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKN
DYDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPSLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP
DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFD
VFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPL
LSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS

Sequences:

>Translated_381_residues
MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKN
DYDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPSLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP
DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFD
VFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPL
LSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS
>Mature_380_residues
TNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKND
YDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEINPSLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPD
APPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFDV
FNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLL
SVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=376, Percent_Identity=32.9787234042553, Blast_Score=238, Evalue=8e-63,
Organism=Homo sapiens, GI300863124, Length=324, Percent_Identity=34.5679012345679, Blast_Score=231, Evalue=8e-61,
Organism=Homo sapiens, GI300863126, Length=376, Percent_Identity=29.7872340425532, Blast_Score=188, Evalue=7e-48,
Organism=Homo sapiens, GI13376042, Length=324, Percent_Identity=31.1728395061728, Blast_Score=188, Evalue=8e-48,
Organism=Homo sapiens, GI266458393, Length=200, Percent_Identity=34.5, Blast_Score=115, Evalue=6e-26,
Organism=Homo sapiens, GI266458397, Length=200, Percent_Identity=34.5, Blast_Score=115, Evalue=7e-26,
Organism=Homo sapiens, GI42794625, Length=200, Percent_Identity=34.5, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI266456254, Length=200, Percent_Identity=34.5, Blast_Score=114, Evalue=1e-25,
Organism=Homo sapiens, GI42822893, Length=143, Percent_Identity=37.0629370629371, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI266458395, Length=143, Percent_Identity=37.0629370629371, Blast_Score=93, Evalue=3e-19,
Organism=Escherichia coli, GI87082093, Length=381, Percent_Identity=99.4750656167979, Blast_Score=790, Evalue=0.0,
Organism=Escherichia coli, GI1788717, Length=401, Percent_Identity=29.6758104738155, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1786222, Length=364, Percent_Identity=24.7252747252747, Blast_Score=98, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI32564160, Length=211, Percent_Identity=28.436018957346, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI115535051, Length=199, Percent_Identity=29.1457286432161, Blast_Score=70, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24648431, Length=333, Percent_Identity=32.1321321321321, Blast_Score=211, Evalue=5e-55,
Organism=Drosophila melanogaster, GI24585488, Length=335, Percent_Identity=28.3582089552239, Blast_Score=100, Evalue=2e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41628; Mature: 41497

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQ
CCCCCCCCCCCCEEEEEEHHHHCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCH
SLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEIN
HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHCC
PSLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVYL
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCHHCCHHHHHHHHHHH
FSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFD
HHHHHHHHHCCCHHCCCCEEEEHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCHH
VFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKT
HCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPH
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHEEEECCCEEECCCCEEEECCCCCC
VMPGAATLDQHGEQIRQEFSS
CCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPPGHGDDTRTFGPYVDGQ
CCCCCCCCCCCEEEEEEHHHHCCCCHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCH
SLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFRPGTMEKLGFSWETLQEIN
HHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHHHHCC
PSLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYPDAPPVRVGTSLADLCGGVYL
CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCCCCCHHCCHHHHHHHHHHH
FSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMAYIATGKSPQRLGNRHPYMAPFD
HHHHHHHHHCCCHHCCCCEEEEHHHHHHHHHHHHHHHEEEECCCCHHHHCCCCCCCCCHH
VFNTQDKPITICCGNDKLFSALCQALELTELVNDPRFSSNILRVQNQAILKQYIERTLKT
HCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
QAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQARNMLIEAGGIMMPGNPIKISGCADPH
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHEEEECCCEEECCCCEEEECCCCCC
VMPGAATLDQHGEQIRQEFSS
CCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]