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The map label for this gene is yfdV

Identifier: 187732206

GI number: 187732206

Start: 2543939

End: 2544883

Strand: Reverse

Name: yfdV

Synonym: SbBS512_E2741

Alternate gene names: 187732206

Gene position: 2544883-2543939 (Counterclockwise)

Preceding gene: 187731638

Following gene: 187732857

Centisome position: 55.13

GC content: 44.66

Gene sequence:

>945_bases
ATGCTAACATTTTTTATTGGCGATTTATTGCCTATTATCGTAATCATGCTGTTGGGTTATTTTAGCGGCAGACGAGAAAC
TTTTTCAGAAGATCAAGCCCGCGCATTTAATAAACTGGTATTAAACTACGCGCTTCCTGCGGCTCTATTTGTATCTATTA
CTCGGGCAAACAGGGAAATGATTTTTGCGGACACTCGTCTGACCCTTGTATCACTTGTGGTTATTGTCGGATGTTTCTTT
TTCTCCTGGTTCGGTTGCTACAAATTTTTTAAACGTACCCATGCAGAAGCAGCTGTATGTGCATTAATTGCAGGTTCACC
TACCATTGGATTCCTAGGGTTTGCAGTTCTCGATCCTATTTATGGTGATTCCGTATCAACAGGGTTAGTGGTAGCAATTA
TTTCTATTATTGTTAACGCAATTACTATTCCTATTGGTCTGTATTTGCTGAATCCTTCTTCAGGAGCGGATGGTAAGAAG
AATAGTAATCTGAGTGCATTAATTTCTGCGGCAAAGGAGCCAGTAGTATGGGCACCTGTTCTGGCAACGATCCTGGTGTT
GGTTGGGGTAAAAATTCCGGCAGCATGGGACCCAACCTTTAATCTGATTGCGAAGGCTAACTCAGGGGTAGCGGTATTCG
CTGCGGGGTTGACTCTGGCTGCACATAAATTCGAGTTCAGTGCCGAAATTGCTTATAACACCTTCCTGAAGCTGATTCTG
ATGCCACTGGCACTGCTTCTCGTTGGTATGGCATGTCATTTGAACAGCGAACATCTGCAGATGATGGTACTGGCAGGCGC
ATTACCGCCGGCATTCTCCGGAATTATTATTGCCAGCCGGTTTAATGTCTACACCCGTACTGGTACAGCGTCATTGGCTG
TGAGCGTACTGGGCTTTGTCGTCACGGCTCCCTTGTGGATTTATGTCAGTCGACTGGTTTCATAA

Upstream 100 bases:

>100_bases
ACTTAACCCAAAACAAGTCGCTGGTAATTAAATACTGACATCGTCTCCTCTTGCCAACTCATTATGCGATGGTGAGGGGA
CCCTTATCGGAAATACTATT

Downstream 100 bases:

>100_bases
TTAATCATGTTATTGATTTTACATAAATGCCGAAGTGTCTTTTCACCTTCGGCTTTTTTCAAGGCATAAGCAAATGACAA
ATAATGAAAGCAAAGGGCCG

Product: putative transporter YfdV

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFF
FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS

Sequences:

>Translated_314_residues
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFF
FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS
>Mature_314_residues
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFF
FSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS

Specific function: Unknown

COG id: COG0679

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the auxin efflux carrier (TC 2.A.69) family

Homologues:

Organism=Escherichia coli, GI1788715, Length=314, Percent_Identity=100, Blast_Score=624, Evalue=1e-180,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YFDV_ECO57 (P0AA51)

Other databases:

- EMBL:   AE005174
- EMBL:   BA000007
- PIR:   D91035
- RefSeq:   NP_288942.1
- RefSeq:   NP_311279.1
- ProteinModelPortal:   P0AA51
- PRIDE:   P0AA51
- EnsemblBacteria:   EBESCT00000025071
- EnsemblBacteria:   EBESCT00000060259
- GeneID:   915647
- GeneID:   958378
- GenomeReviews:   AE005174_GR
- GenomeReviews:   BA000007_GR
- KEGG:   ece:Z3635
- KEGG:   ecs:ECs3252
- GeneTree:   EBGT00050000011933
- HOGENOM:   HBG351062
- OMA:   MIATRFE
- ProtClustDB:   PRK09903
- BioCyc:   ECOL83334:ECS3252-MONOMER
- InterPro:   IPR004776

Pfam domain/function: PF03547 Mem_trans

EC number: NA

Molecular weight: Translated: 33616; Mature: 33616

Theoretical pI: Translated: 9.13; Mature: 9.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1afbc08c)-; HASH(0x1fa29d68)-; HASH(0x1fa7a238)-; HASH(0x1abe193c)-; HASH(0x1fb1fd80)-; HASH(0x1f709774)-; HASH(0x1fc2e2f4)-; HASH(0x1f958994)-; HASH(0x1fb8a02c)-; HASH(0x1e2a94b8)-;

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREM
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
YGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPV
CCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEHHHH
LATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
HHHHHHHHCCCCCCCCCCCHHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFV
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHCCEEEEEECEEEEECCHHHHHHHHHHHH
VTAPLWIYVSRLVS
HHHHHHHHHHHHCH
>Mature Secondary Structure
MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYALPAALFVSITRANREM
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE
IFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI
EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCC
YGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKKNSNLSALISAAKEPVVWAPV
CCCCCHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEHHHH
LATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFSAEIAYNTFLKLIL
HHHHHHHHCCCCCCCCCCCHHHEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
MPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYTRTGTASLAVSVLGFV
HHHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHCCEEEEEECEEEEECCHHHHHHHHHHHH
VTAPLWIYVSRLVS
HHHHHHHHHHHHCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796