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The map label for this gene is ydaM [H]

Identifier: 187732577

GI number: 187732577

Start: 1445784

End: 1447076

Strand: Reverse

Name: ydaM [H]

Synonym: SbBS512_E1586

Alternate gene names: 187732577

Gene position: 1447076-1445784 (Counterclockwise)

Preceding gene: 187732105

Following gene: 187732276

Centisome position: 31.35

GC content: 47.25

Gene sequence:

>1293_bases
ATGACGTGGCTTTTTTGCGATCGGATAGCAACAAAAATTGATAAAAATAACGGGATCTCAATGATTACGCACAACTTCAA
TACCCTGGACTTACTCACCAGTCCTGTCTGGATTGTTTCGCCCTTTGAGGAACAGTTAATTTATGCCAATAGCGCGGCGC
GACTGTTGATGCAAGACCTCACGTTTAGTCAGCTACGAACCGGACCCTATTCCGTCTCCTCACAAAAAGAACTGCCGAAA
TACCTCTCCGATCTGCAAAACCAACACGATATTATCGAAATCCTCACTGTTCAGCGTAAAGAAGAGGAAACAGCATTAAG
CTGTCGGCTTGTTTTGCGAGAGCTGACAGAAACAGAACCGGTGATTATTTTCGAAGGTATCGAAGCGCCGGCAACGCTGG
GTTTAAAAGCCAGTCGCTCGGCAAATTATCAGCGCAAAAAACAAGGTTTTTATGCGCGCTTTTTTCTGACTAACTCTGCA
CCAATGTTGTTGATTGACCCCTCACGAGATGGCCAAATCGTCGATGCTAACCTCGCCGCGCTCAATTTCTACGGTTATAA
CCATGAAACGATGTGCCAGAAACATACCTGGGAAATTAATATGCTCGGGCGTCGCGTCATGCCTATCATGCATGAAATTT
CGCATTTACCCGGCGGTCATAAACCTTTGAATTTTGTTCATAAACTGGCGGATGGATCTACTCGTCATGTGCAGACCTAT
GCCGGGCCGATTGAAATTTATGGCGACAAGCTCATGTTATGTATTGTGCATGATATTACTGAGCAAAAACGGCAGGAGGA
GCAGCTGGAACATGCTGCTCACCATGACGCGATGACCGGATTACTGAATCGGCGACAGTTTTATCACATTACGGAACCAG
GCCAAATGCAGCACCTCGCCATCGCCCAGGATTACAGCTTGTTGCTCATCGACACCAATCGTTTTAAACACATTAACGAT
CTCTATGGGCATTCTAAAGGTGATGAGGTGTTATGCGCCCTCGCCCGCACCCTCGAAAGTTGCGCTCGCAAAGGCGATTT
GGTGTTTCGTTGGGGAGGCGAAGAGTTTGTCTTATTGATACCAAGAACCCCACTGGATACTGCGCTTTCGCTGGCTGAAA
CTATCCGTGTAAGCGTGGCCAAAGTGAGTATTTCGGGCTTACCACGTTTTACCGTCAGCATTGGTGTGGCGCATCACGAA
GGAAATGAAAGCATCGATGAACTGTTTAAACGCGTTGATGATGCTTTGTATCGGGCGAAAAATGATGGACGCAACCGCGT
GCTGGCGGCATAA

Upstream 100 bases:

>100_bases
AATTCTGTCTAAATTGAATACAAAAAGCAAAATGCTTTTCCGTATACAAACCGTGTGAAGTGTTAAATAGCGTCTATCAT
TATCAGAATTATCTGATCAT

Downstream 100 bases:

>100_bases
GCCGCGGATGCGTCTCGAGATCAACGGCTGCGCTTAGCGTGGCGCTCCCAGTTTTCTTGCTTCGCCTGCGCCGTTTTACG
TAGTGCGACGTAACACGCCC

Product: sensory box-containing diguanylate cyclase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MTWLFCDRIATKIDKNNGISMITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQLRTGPYSVSSQKELPK
YLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSA
PMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTY
AGPIEIYGDKLMLCIVHDITEQKRQEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTNRFKHIND
LYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLIPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHE
GNESIDELFKRVDDALYRAKNDGRNRVLAA

Sequences:

>Translated_430_residues
MTWLFCDRIATKIDKNNGISMITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQLRTGPYSVSSQKELPK
YLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSA
PMLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTY
AGPIEIYGDKLMLCIVHDITEQKRQEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTNRFKHIND
LYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLIPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHE
GNESIDELFKRVDDALYRAKNDGRNRVLAA
>Mature_429_residues
TWLFCDRIATKIDKNNGISMITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQLRTGPYSVSSQKELPKY
LSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAP
MLLIDPSRDGQIVDANLAALNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTYA
GPIEIYGDKLMLCIVHDITEQKRQEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLAIAQDYSLLLIDTNRFKHINDL
YGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLIPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEG
NESIDELFKRVDDALYRAKNDGRNRVLAA

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=410, Percent_Identity=98.780487804878, Blast_Score=846, Evalue=0.0,
Organism=Escherichia coli, GI145693134, Length=166, Percent_Identity=35.5421686746988, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=33.5294117647059, Blast_Score=96, Evalue=5e-21,
Organism=Escherichia coli, GI1788381, Length=179, Percent_Identity=32.9608938547486, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI87082007, Length=171, Percent_Identity=33.9181286549708, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=33.1325301204819, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787802, Length=172, Percent_Identity=35.4651162790698, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI1788085, Length=185, Percent_Identity=30.8108108108108, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1787816, Length=160, Percent_Identity=35, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1787541, Length=200, Percent_Identity=28.5, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=31.9018404907975, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI87081974, Length=152, Percent_Identity=30.2631578947368, Blast_Score=68, Evalue=9e-13,
Organism=Escherichia coli, GI1788956, Length=165, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656 [H]

Pfam domain/function: PF00990 GGDEF; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 48805; Mature: 48673

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTWLFCDRIATKIDKNNGISMITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDL
CCEEEHHHHHHHHCCCCCEEEEEECCCCHHHHCCCEEEECCHHHHEEECCHHHHHHHHHC
TFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEP
CHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
VIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
EEEEECCCCCCCCCEECCCCCCHHHHHCCEEEEEEEECCCCEEEECCCCCCEEEEEEEEE
LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTY
EEEECCCCHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEE
AGPIEIYGDKLMLCIVHDITEQKRQEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA
CCCEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEE
IAQDYSLLLIDTNRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLI
EECCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEE
PRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAK
CCCCHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC
NDGRNRVLAA
CCCCCCCCCC
>Mature Secondary Structure 
TWLFCDRIATKIDKNNGISMITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDL
CEEEHHHHHHHHCCCCCEEEEEECCCCHHHHCCCEEEECCHHHHEEECCHHHHHHHHHC
TFSQLRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEP
CHHHHCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
VIIFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
EEEEECCCCCCCCCEECCCCCCHHHHHCCEEEEEEEECCCCEEEECCCCCCEEEEEEEEE
LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQTY
EEEECCCCHHHHHHCCEEEEHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCEEEEE
AGPIEIYGDKLMLCIVHDITEQKRQEEQLEHAAHHDAMTGLLNRRQFYHITEPGQMQHLA
CCCEEEECCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEE
IAQDYSLLLIDTNRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGEEFVLLI
EECCCEEEEEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEE
PRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRVDDALYRAK
CCCCHHHHHHHHHHHHHEEEEEEECCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHC
NDGRNRVLAA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]