| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is abgB
Identifier: 187732276
GI number: 187732276
Start: 1438739
End: 1440184
Strand: Reverse
Name: abgB
Synonym: SbBS512_E1580
Alternate gene names: 187732276
Gene position: 1440184-1438739 (Counterclockwise)
Preceding gene: 187732577
Following gene: 187734177
Centisome position: 31.2
GC content: 52.49
Gene sequence:
>1446_bases ATGCAGGAAATCTATCGTTTTATCGACGATGCGATTGAAGCCGATCGCCAACGTTATACCGATATTGCCGATCAAATCTG GGATCATCCAGAAACACGTTTTGAAGAGTTCTGGTCAGCGGAGCATCTGGCTTCGGCGCTGGAATCTGCAGGCTTCACCG TTACCCGCAACGTAGGCTATATCCCAAATGCCTTTATTGCTTCGTTTGGTCAAGGCAAACCGGTTATCGCCCTGCTGGGA GAATATGACGCCCTGGCAGGTTTAAGTCAGCAAGCAGGTTGCGCGCAACCTACATCCGTGACGCCCGGTGAAAATGGTCA CGGTTGCGGACACAATTTGCTGGGAACCGCCGCCTTTGCCGCTGCAATAGCCGTCAAGAAATGGCTGGAACAATATGGGC AAGGCGGCACGGTGCGCTTTTATGGTTGTCCTGGCGAAGAAGGCGGCTCGGGTAAAACGTTCATGGTTCGCGAGGGGGTA TTTGATGATGTGGATGCGGCACTCACCTGGCACCCGGAAGCCTTTGCCGGTATGTTCAATACCCGCACGCTGGCAAACAT TCAGGCATCATGGCGCTTTAAAGGGATCGCAGCACATGCCGCGAATTCCCCTCATTTGGGACGCAGCGCCCTTGATGCCG TAACGTTGATGACCACTGGCACCAACTTCCTCAACGAACATATTATTGAAAAAGCGCGCGTACACTATGCCATCACAAAT AGCGGCGGGATCTCGCCCAACGTGGTCCAGGCGCAGGCAGAAGTGCTTTATCTTATCCGCGCCCCCGAAATGACCGACGT GCAGCATATTTATGATCGGGTCGCCAAAATCGCCGAAGGTGCGGCATTGATGACCGAAACCACGGTTGAATGCCGCTTCG ACAAAGCCTGTTCCAGTTATCTCCCGAATCGCACCTTAGAAAATGCCATGTACCATGCCCTATCCCATTTTGGTACCCCG GAATGGAACTCCGAAGAACTGGCTTTTACGAAACAAATTCAGGCTACGCTCCCCCCCAACGATCGGCAAAACAGTCTGAA TAATATCGCCGCAACCGGTGGCGAAAACGGCAAGGCTTTTGCACTACGTCATCGTGAAACGGTACTGGCGAATGAGGTCG CTCCATATGCCGCCACCGATAACGTGCTTGCGGCATCGACTGATGTCGGCGACGTCAGTTGGAAACTGCCTGTTGCCCAG TGTTTCAGCCCCTGTTTTGCCGTCGGTACACCGCTACATACGTGGCAACTGGTTAGCCAGGGGCGAACATCTATTGCTCA TAAAGGAATGCTGCTGGCGGCGAAAACTATGGCAGCAACCACACTCAATCTCTTCATTGATTCAGGGCTATTGCAAGAAT GCCAACAAGAGCATCAGCAAGTTACGGACACGCAACCGTATCACTGCCCTATCCCAAAAAACGTGACACCGTCATCTTTA AAATAA
Upstream 100 bases:
>100_bases ATCACAACGAAAAATTCGATTTTGACGAGCAGGTTCTCGCTATTGCCGTCGAAACGCTGGCGCGCACCGCGCTCAATTTT CCCTGGACGCGAGGTATCTG
Downstream 100 bases:
>100_bases CAACAACAACGCAAACACAACAACCGAGGAATGCCCATGAGTATGTCATCCATACCGTCGTCCTCCCAATCCGGGAAGCT CTATGGCTGGGTCGAAAGAA
Product: aminobenzoyl-glutamate utilization protein B
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 481; Mature: 481
Protein sequence:
>481_residues MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGYIPNAFIASFGQGKPVIALLG EYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITN SGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSYLPNRTLENAMYHALSHFGTP EWNSEELAFTKQIQATLPPNDRQNSLNNIAATGGENGKAFALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQ CFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTLNLFIDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSSL K
Sequences:
>Translated_481_residues MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGYIPNAFIASFGQGKPVIALLG EYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITN SGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSYLPNRTLENAMYHALSHFGTP EWNSEELAFTKQIQATLPPNDRQNSLNNIAATGGENGKAFALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQ CFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTLNLFIDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSSL K >Mature_481_residues MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGYIPNAFIASFGQGKPVIALLG EYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITN SGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSYLPNRTLENAMYHALSHFGTP EWNSEELAFTKQIQATLPPNDRQNSLNNIAATGGENGKAFALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQ CFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTLNLFIDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSSL K
Specific function: Required but not essential for aminobenzoyl-glutamate utilization. May participate in hydrolysis of aminobenzoyl- glutamate to aminobenzoate, either alone or in combination with AbgA [H]
COG id: COG1473
COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI58082085, Length=476, Percent_Identity=25.4201680672269, Blast_Score=112, Evalue=7e-25, Organism=Escherichia coli, GI1787598, Length=481, Percent_Identity=98.1288981288981, Blast_Score=986, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017145 - InterPro: IPR010168 - InterPro: IPR002933 - InterPro: IPR011650 [H]
Pfam domain/function: PF01546 Peptidase_M20 [H]
EC number: NA
Molecular weight: Translated: 52264; Mature: 52264
Theoretical pI: Translated: 5.66; Mature: 5.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGY CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCEEEECCCC IPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFA CCCHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFN HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEECCHHHHHHHC TRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITN CCHHEECEECEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEC SGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSY CCCCCCHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHH LPNRTLENAMYHALSHFGTPEWNSEELAFTKQIQATLPPNDRQNSLNNIAATGGENGKAF CCCHHHHHHHHHHHHHCCCCCCCCCHHHEEHHHEECCCCCCCHHHHHHHCCCCCCCCCEE ALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQ EEEHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHC GRTSIAHKGMLLAAKTMAATTLNLFIDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSSL CCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC K C >Mature Secondary Structure MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLASALESAGFTVTRNVGY CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCHHHHHHHHHHCCCEEEECCCC IPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTPGENGHGCGHNLLGTAAFA CCCHHHHHCCCCCCEEEEECCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH AAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGVFDDVDAALTWHPEAFAGMFN HHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCCEEECCHHHHHHHC TRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMTTGTNFLNEHIIEKARVHYAITN CCHHEECEECEEEEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHEEEEEEC SGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAKIAEGAALMTETTVECRFDKACSSY CCCCCCHHHHHHEEEEEEEECCCCCHHHHHHHHHHHHHCCCHHEECCHHHHHHHHHHHHH LPNRTLENAMYHALSHFGTPEWNSEELAFTKQIQATLPPNDRQNSLNNIAATGGENGKAF CCCHHHHHHHHHHHHHCCCCCCCCCHHHEEHHHEECCCCCCCHHHHHHHCCCCCCCCCEE ALRHRETVLANEVAPYAATDNVLAASTDVGDVSWKLPVAQCFSPCFAVGTPLHTWQLVSQ EEEHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEECCHHHHHHHHHHHCCCHHHHHHHHC GRTSIAHKGMLLAAKTMAATTLNLFIDSGLLQECQQEHQQVTDTQPYHCPIPKNVTPSSL CCHHHHHCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC K C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 9829935 [H]