| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is ydhV [H]
Identifier: 187731901
GI number: 187731901
Start: 1715346
End: 1716992
Strand: Reverse
Name: ydhV [H]
Synonym: SbBS512_E1873
Alternate gene names: 187731901
Gene position: 1716992-1715346 (Counterclockwise)
Preceding gene: 187733648
Following gene: 187730741
Centisome position: 37.2
GC content: 49.12
Gene sequence:
>1647_bases TTGACCAGTCCGGAAACCTGTGTGGCGGCTATTGGTCAGGCTGGGGAAAACCTTGTTCCTCTCTCTGGCATGTTGAATAG CCGTAACCACAGCGGCGGTGCGGGAACTGGCGCAATTATGGGTTCGAAAAACCTGAAAGCGATTGCGGTTGAAGGGACGA AAGGGGTCAACATTGCCGATCGTCAGGAGATGAAGCGTCTCAACGATTACATGATGACTGAACTTATTGGTGCGAATAAC AACCATGTCGTGCCAAGTACGCCGCAATCGTGGGCAGAGTATTCAGATCCCAAGTCACGTTGGACAGCACGTAAAGGGCT GTTTTGGGGCGCGGCTGAAGGTGGTCCGATTGAAACGGGGGAAATTCCGCCAGGCAATCAGAACACGGTCGGCTTTCGTA CCTATAAATCCGTTTTTGACTTAGGTCCGGCGGCAGAGAAATACACAGTAAAAATGAGTGGCTGCCACTCTTGCCCGATC CGTTGTATGACCCAAATGAATATTCCTCGGGTGAAAGAGTTTGGCGTGCCCAGCACAGGTGGTAACACTTGTGTAGCCAA CTTTGTCCATACCACCATCTTTCCGAACGGTCCGAAAGATTTTGAAGATAAAGACGATGGCCGTGTGATTGGTAACTTGG TTGGTCTGAATTTGTTCGATGACTACGGCCTATGGTGTAACTACGGGCAGTTGCATCGCGACTTTACTTATTGTTACAGC AAAGGGGTGTTCAAGCGTGTTCTGCCTGCTGAAGAGTATGCGGAAATTCACTGGGATCAACTGGAAGCGGGTGACGTTAA TTTCATTAAAGATTTTTACTACCGTCTGGCGCATCGTGTGGGTGAGCTGAGTCACCTGGCTGATGGTTCATATGCCATCG CAGAACGCTGGAATTTGGGTGAAGAGTACTGGGGCTACGCGAAAAATAAACTCTGGTCGCCGTTTGGCTATCCGGTTCAC CATGCCAATGAAGCGTCAGCGCAGGTCGGTTCCATTGTTAACTGTATGTTCAACCGTGACTGCATGACACATACCCATAT CAACTTTATTGGTTCCGGCTTGCCATTGAAACTGCAACGTGAAGTGGCGAAAGAGCTTTTTGGTTCTGAAGATGCCTACG ATGAAACCAAAAACTACACGCCAATCAATGACGCAAAAATTAAATATGCTAAGTGGTCGCTGTTGCGGGTCTGTTTGCAT AACGCCGTCACCCTGTGTAACTGGGTCTGGCCAATGACCGTTTCGCCGCTGAAAAGCCGTAATTACCGGGGCGATCTGGC GCTTGAAGCCAAATTCTTCAAAGCGATCACCGGCGAAGAGATGACTCAGGAAAAATTAGATTTAGCTGCAGAGCGTATCT TTACGTTGCATCGTGCCTACACGGTAAAACTTATGCAAACCAAAGATATGCGTAATGAACACGATCTTATCTGTTCCTGG GTATTCGACAAGGATCCGCAGATCCCGGTCTTTACTGAAGGTACTGACAAAATGGATCGTGACGATATGCATGCTTCGCT CACGATGTTCTACAAAGAAATGGGCTGGGACCCACAGCTTGGTAGTCCCACCCGCGAAACATTGCAGCGTCTGGGGCTGG AAGATATTGCCGCCGATCTGGCAGCACACAATCTACTGCCTGTGTAA
Upstream 100 bases:
>100_bases ACCGGTATGGCTGAAGATTAAAGATGACAAAGTTAGCCTGGAAAAAGCCGATTTCTTATGGGGAAAAGGGACGCGCGCAA CGACGGAAGAAATTTGTCGA
Downstream 100 bases:
>100_bases GGAATGGGTGAGATGAACCATCGGGATGAATTGCCGTTAGCGAAAGTCAGCGAAGTTGACGAGGCGAAGCGGCAATGGTT ACAGGGGATGCGTCACCCCG
Product: aldehyde ferredoxin oxidoreductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 548; Mature: 547
Protein sequence:
>548_residues MTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANN NHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPI RCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS KGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVH HANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLH NAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSW VFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQRLGLEDIAADLAAHNLLPV
Sequences:
>Translated_548_residues MTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANN NHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPI RCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS KGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVH HANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLH NAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSW VFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQRLGLEDIAADLAAHNLLPV >Mature_547_residues TSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNN HVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIR CMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSK GVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHH ANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHN AVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWV FDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQRLGLEDIAADLAAHNLLPV
Specific function: Unknown
COG id: COG2414
COG function: function code C; Aldehyde:ferredoxin oxidoreductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the AOR/FOR family [H]
Homologues:
Organism=Escherichia coli, GI1787962, Length=548, Percent_Identity=99.2700729927007, Blast_Score=1150, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013985 - InterPro: IPR013983 - InterPro: IPR001203 [H]
Pfam domain/function: PF01314 AFOR_C; PF02730 AFOR_N [H]
EC number: NA
Molecular weight: Translated: 61480; Mature: 61349
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIAD CCCHHHHHHHHHHCCCCEECHHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCC RQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETG HHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHCCCHHHHHHHHHCCEEECCCCCCCCCC EIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTG CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCCCCHHHCCCCCCC GNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHCCCEECCCCCEECCHHHHHHHHHHHH KGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLG HHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCC EEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQR HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHH EVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSR HHHHHHCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC NYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSW CCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHCCCCCCCEEEEE VFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQRLGLEDIAADL EECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHH AAHNLLPV HHHCCCCC >Mature Secondary Structure TSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIAD CCHHHHHHHHHHCCCCEECHHHHHCCCCCCCCCCCEEEECCCCCEEEEEECCCCCCCCC RQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETG HHHHHHHHHHHHHHHHCCCCCEECCCCCHHHHHCCCHHHHHHHHHCCEEECCCCCCCCCC EIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTG CCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHCCCCCCHHHCCCCCCC GNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS CCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEHHHCCCEECCCCCEECCHHHHHHHHHHHH KGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLG HHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCC EEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQR HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCHHHHH EVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSR HHHHHHCCCCCCCHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHCC NYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSW CCCCCEEEHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEHHCCCCCCCEEEEE VFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQRLGLEDIAADL EECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHH AAHNLLPV HHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9023191; 9278503 [H]