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The map label for this gene is oppA

Identifier: 187731549

GI number: 187731549

Start: 1290135

End: 1291766

Strand: Direct

Name: oppA

Synonym: SbBS512_E1412

Alternate gene names: 187731549

Gene position: 1290135-1291766 (Clockwise)

Preceding gene: 187731646

Following gene: 187733058

Centisome position: 27.95

GC content: 47.61

Gene sequence:

>1632_bases
ATGACCAACATCACCAAGAGAAGTTTAGTAGCAGCTGGCGTTCTGGCTGCGCTAATGGCAGGGAATGTCGCGCTGGCAGC
TGATGTACCCGCAGGCGTCACACTGGCGGAAAAACAAACGCTGGTACGTAACAATGGTTCAGAAGTTCAGTCATTAGATC
CGCACAAAATTGAAGGTGTTCCGGAGTCTAATATCAGCCGAGACCTGTTTGAAGGCTTACTGGTCAGCGATCTTGACGGT
CATCCGGCACCTGGCGTCGCTGAATCCTGGGATAATAAAGACGCGAAAGTCTGGATCTTCCATTTGCGTAAAGATGCGAA
ATGGTCTGATGGTACGCCAGTCACAGCACAAGACTTTGTGTATAGCTGGCAACGTTCTGTTGATCCGAACACTGCTTCTC
CGTATGCCAGTTATCTGCAATATGGGCATATCGCCGGTATTGATGAAATTCTTGAAGGGAAAAAAACGATTACCGATCTC
GGCGTGAAAGCTATTGATGATCACACATTAGAAGTCACCTTAAGTGAACCCGTTCCGTACTTCTATAAATTACTTGTTCA
CCCATCAACTTCACCGGTGCCAAAAGCCGCTATCGAGAAATTCGGCGAAAAATGGACCCAGCCTGGTAATATCGTCACCA
ACGGTGCCTATACCTTAAAAGATTGGGTCGTAAACGAACGAATCGTTCTTGAACGCAGCCCGACCTACTGGAACAACGCG
AAAACCGTTATTAACCAGGTAACCTATTTGCCTATTGCTTCTGAAGTTACCGATGTCAACCGCTACCGTAGTGGTGAAAT
CGACATGACTTATAACAACATGCCGATCGAATTGTTCCAGAAGCTGAAAAAAGAGATCCCGGACGAAGTTCACGTTGATC
CATACCTGTGCACTTACTATTACGAAATTAACAACCAGAAACCGCCATTCAACGATGTGCGTGTGCGTACCGCACTGAAA
CTAGGTATGGACCGCGATATCATTGTTAATAAAGTGAAAGCGCAGGGCGACATGCCCGCCTATGGTTACACTCCACCGTA
TACTGATGGCGCAAAATTGACTCAGCCGGAATGGTTTGGCTGGAGCCAGGAAAAACGTAACGAAGAAGCGAAAAAACTGC
TGGCTGAAGCGGGTTATACCGCAGACAAACCGTTGACCATCAACCTGTTGTATAACACCTCCGATCTGCATAAAAAGCTG
GCGATTGCTGCCTCTTCATTGTGGAAGAAAAACATTGGTGTAAACGTCAAACTGGTTAACCAGGAGTGGAAAACGTTCCT
CGACACCCGTCACCAGGGTACTTTTGATGTGGCCCGTGCAGGCTGGTGTGCTGACTACAACGAACCAACTTCCTTCCTGA
ACACCATGCTTTCGAACAGCTCGATGAATACCGCGCATTATAAGAGCCCGGCCTTTGACAGCATTATGGCGGAAACGCTG
AAAGTGACTGACGAGGCGCAGCGCACAGCTCTGTACACTAAAGCAGAACAACAGCTGGATAAGGATTCGGCCATTGTTCC
TGTTTATTACTACGTGAATGCGCGTCTGGTGAAACCGTGGGTTGGTGGCTATACCAGCAAAGATCCGCTGGATAATACCT
ATACCCGGAATATGTACATTGTGAAGCACTAA

Upstream 100 bases:

>100_bases
AACCTGACAGCAGAAAGTCTCCGAGCCTGTGCAGGGTCCCAATCCGGGATTACACATGCTGGTTAATACCAGTAATTATA
ATGAGGGAGTCCAAAAAACA

Downstream 100 bases:

>100_bases
TGGCAATACGTGGGGCAGGAGTGTCCTGCTCCACGGTGTCTGATTTTTATCGCATTACAGAAGGCACAGGCCAGAAGGTA
GGGCAATGTTAAAATTTATT

Product: oligopeptide ABC transporter periplasmic oligopeptide-binding protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 543; Mature: 542

Protein sequence:

>543_residues
MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDG
HPAPGVAESWDNKDAKVWIFHLRKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKTITDL
GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNA
KTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALK
LGMDRDIIVNKVKAQGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKL
AIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETL
KVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTSKDPLDNTYTRNMYIVKH

Sequences:

>Translated_543_residues
MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDG
HPAPGVAESWDNKDAKVWIFHLRKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKTITDL
GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNA
KTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALK
LGMDRDIIVNKVKAQGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKL
AIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETL
KVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTSKDPLDNTYTRNMYIVKH
>Mature_542_residues
TNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGH
PAPGVAESWDNKDAKVWIFHLRKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKTITDLG
VKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNAK
TVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKL
GMDRDIIVNKVKAQGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLA
IAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETLK
VTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTSKDPLDNTYTRNMYIVKH

Specific function: This protein is a component of the oligopeptide permease, a binding protein-dependent transport system, it binds peptides up to five amino acids long with high affinity [H]

COG id: COG4166

COG function: function code E; ABC-type oligopeptide transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787495, Length=543, Percent_Identity=98.8950276243094, Blast_Score=1108, Evalue=0.0,
Organism=Escherichia coli, GI87081878, Length=531, Percent_Identity=48.0225988700565, Blast_Score=508, Evalue=1e-145,
Organism=Escherichia coli, GI1789397, Length=530, Percent_Identity=44.5283018867925, Blast_Score=456, Evalue=1e-129,
Organism=Escherichia coli, GI1787052, Length=515, Percent_Identity=26.0194174757282, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787762, Length=518, Percent_Identity=26.0617760617761, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI1789966, Length=488, Percent_Identity=25.2049180327869, Blast_Score=115, Evalue=5e-27,
Organism=Escherichia coli, GI1789887, Length=500, Percent_Identity=25, Blast_Score=112, Evalue=5e-26,
Organism=Escherichia coli, GI1787551, Length=549, Percent_Identity=23.4972677595628, Blast_Score=97, Evalue=2e-21,

Paralogues:

None

Copy number: 760 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 380 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 500 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 2360 Molecules/Cell In: Stationary-Phase,

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 61022; Mature: 60891

Theoretical pI: Translated: 6.31; Mature: 6.31

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGV
CCCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCC
PESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWIFHLRKDAKWSDGTPVTAQDFV
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHH
YSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKTITDLGVKAIDDHTLEVTLSEPVPY
HHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHCCCEEECCCEEEEEECCCCCH
FYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNA
HHHEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEEHHHHCCCEEEEECCCCCCCCH
KTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPDEVHVDPYLCTYY
HHHHHHHHEEECHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEE
YEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKAQGDMPAYGYTPPYTDGAKLTQPEWFG
EEECCCCCCCCHHHHHHHHHHCCCCHHHHEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
WSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLAIAASSLWKKNIGVNVKLVN
CCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEC
QEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETL
HHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
KVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTSKDPLDNTYTRNMYI
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECHHHCCCCCCCCCCCCEECCEEE
VKH
EEC
>Mature Secondary Structure 
TNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRNNGSEVQSLDPHKIEGV
CCCCHHHHHHHHHHHHHHHCCEEEEECCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCC
PESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWIFHLRKDAKWSDGTPVTAQDFV
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCHHHHH
YSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKTITDLGVKAIDDHTLEVTLSEPVPY
HHHHHCCCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHCCCEEECCCEEEEEECCCCCH
FYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYTLKDWVVNERIVLERSPTYWNNA
HHHEEECCCCCCCCHHHHHHHHHHHCCCCCEEECCCEEEHHHHCCCEEEEECCCCCCCCH
KTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPDEVHVDPYLCTYY
HHHHHHHHEEECHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCEEEEEE
YEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKAQGDMPAYGYTPPYTDGAKLTQPEWFG
EEECCCCCCCCHHHHHHHHHHCCCCHHHHEEHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
WSQEKRNEEAKKLLAEAGYTADKPLTINLLYNTSDLHKKLAIAASSLWKKNIGVNVKLVN
CCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEC
QEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSNSSMNTAHYKSPAFDSIMAETL
HHHHHHHHCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
KVTDEAQRTALYTKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTSKDPLDNTYTRNMYI
HHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCEEECHHHCCCCCCCCCCCCEECCEEE
VKH
EEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2187863; 9097039; 9278503; 2015910; 9298646; 9600841 [H]