| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is trg [H]
Identifier: 187731514
GI number: 187731514
Start: 1503131
End: 1503301
Strand: Direct
Name: trg [H]
Synonym: SbBS512_E1646
Alternate gene names: 187731514
Gene position: 1503131-1503301 (Clockwise)
Preceding gene: 187734260
Following gene: 187730295
Centisome position: 32.56
GC content: 55.56
Gene sequence:
>171_bases GTGACGCAACAGAATGCTTCTCTGGTAGAAGAGGCCTCAGCGGCGGCGGTGTCCCTTGAAGAACAGGCGGCACGATTAAC TGAGGCGGTGGATGTATTCCGTCTGAACAAACATTCTGTGTCGGCAGAACCTCGCGGAGCGGGTGAACCAGTTAGTTTCG CTACGGTGTGA
Upstream 100 bases:
>100_bases TATCTGACACTTTGGTTCCCACTACTTATTTGGTGGACACCACTTTGTCTAATTCGTCAGATTCTGACCAGACGGTTCAG GCTGTACGCTTACGGATAAG
Downstream 100 bases:
>100_bases AAATGTTCAAGGAGGGATCGACAGATCCCTTCACCTTTCAGAACGGCATTGATTTTCGAATAGCGTTAATCATCAACTGG CAACCAGAAGAGAACATCGC
Product: methyl-accepting chemotaxis protein III
Products: NA
Alternate protein names: MCP-III; Ribose and galactose chemoreceptor protein [H]
Number of amino acids: Translated: 56; Mature: 55
Protein sequence:
>56_residues MTQQNASLVEEASAAAVSLEEQAARLTEAVDVFRLNKHSVSAEPRGAGEPVSFATV
Sequences:
>Translated_56_residues MTQQNASLVEEASAAAVSLEEQAARLTEAVDVFRLNKHSVSAEPRGAGEPVSFATV >Mature_55_residues TQQNASLVEEASAAAVSLEEQAARLTEAVDVFRLNKHSVSAEPRGAGEPVSFATV
Specific function: Chemotactic-signal transducers respond to changes in the concentration of attractants and repellents in the environment, transduce a signal from the outside to the inside of the cell, and facilitate sensory adaptation through the variation of the level of
COG id: COG0840
COG function: function code NT; Methyl-accepting chemotaxis protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 methyl-accepting transducer domain [H]
Homologues:
Organism=Escherichia coli, GI1787690, Length=56, Percent_Identity=96.4285714285714, Blast_Score=107, Evalue=1e-25,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004090 - InterPro: IPR003122 - InterPro: IPR004091 - InterPro: IPR004089 - InterPro: IPR003660 [H]
Pfam domain/function: PF00672 HAMP; PF00015 MCPsignal; PF02203 TarH [H]
EC number: NA
Molecular weight: Translated: 5872; Mature: 5740
Theoretical pI: Translated: 4.33; Mature: 4.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQQNASLVEEASAAAVSLEEQAARLTEAVDVFRLNKHSVSAEPRGAGEPVSFATV CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCC >Mature Secondary Structure TQQNASLVEEASAAAVSLEEQAARLTEAVDVFRLNKHSVSAEPRGAGEPVSFATV CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 6374654; 9097039; 9278503 [H]