| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
Click here to switch to the map view.
The map label for this gene is ynbB [H]
Identifier: 187730902
GI number: 187730902
Start: 1481219
End: 1481527
Strand: Direct
Name: ynbB [H]
Synonym: SbBS512_E1628
Alternate gene names: 187730902
Gene position: 1481219-1481527 (Clockwise)
Preceding gene: 187731611
Following gene: 187730373
Centisome position: 32.09
GC content: 45.31
Gene sequence:
>309_bases TTGGAGTCATTACCGCTTATCGGTTTTAATTGCTTTGAGCTGTTTCTGTTATTAATACCTTTGGCTGGGTTTCTGATATT AGCCACCTGGCGAGTTTTTGTGGGTGACCCCTCCGGTTTTCTGCATACCGTGAGCGCCATTTTTTGGGGCTGGATAATGA CCGTTTTCGCCTTGAGTCATGCCGCCTGGTTATTAATGTTGCCATCCATGAATATCCAGGGCGGGGCCTTACTGGTGTTA TTTCTTTTGGCATTAACCGCGTCAAACGATATTGCACAGTATTTATGGGTAATGCTGCCAACTTACTGA
Upstream 100 bases:
>100_bases CTGGCAAGGCTGGGACGGAAGTCACTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAGGTCATCGGGCATTATCTGAA CATAAAACACTATCAGTAAG
Downstream 100 bases:
>100_bases TTTAGTGTATGATGGTGATTTTAAGGTGCTTGCGTGGCTTCCATTTCCATCAGATGTCCTTCCTGCTCCGCTACTGAAGG CGTGGTGCGTAACGGCAAAA
Product: hypothetical protein
Products: diphosphate; CDPdiacylglycerol
Alternate protein names: NA
Number of amino acids: Translated: 102; Mature: 102
Protein sequence:
>102_residues MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPSMNIQGGALLVL FLLALTASNDIAQYLWVMLPTY
Sequences:
>Translated_102_residues MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPSMNIQGGALLVL FLLALTASNDIAQYLWVMLPTY >Mature_102_residues MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSHAAWLLMLPSMNIQGGALLVL FLLALTASNDIAQYLWVMLPTY
Specific function: Unknown
COG id: COG4589
COG function: function code R; Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the CDS family [H]
Homologues:
Organism=Escherichia coli, GI1787677, Length=91, Percent_Identity=92.3076923076923, Blast_Score=148, Evalue=8e-38,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000374 [H]
Pfam domain/function: PF01148 CTP_transf_1 [H]
EC number: 2.7.7.41
Molecular weight: Translated: 11377; Mature: 11377
Theoretical pI: Translated: 4.53; Mature: 4.53
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSH CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAWLLMLPSMNIQGGALLVLFLLALTASNDIAQYLWVMLPTY HHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC >Mature Secondary Structure MESLPLIGFNCFELFLLLIPLAGFLILATWRVFVGDPSGFLHTVSAIFWGWIMTVFALSH CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH AAWLLMLPSMNIQGGALLVLFLLALTASNDIAQYLWVMLPTY HHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: CTP; phosphatidate
Specific reaction: CTP + phosphatidate = diphosphate + CDP-diacylglycerol
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9278503; 9097039 [H]