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The map label for this gene is ychO [H]

Identifier: 187730867

GI number: 187730867

Start: 1263325

End: 1264719

Strand: Direct

Name: ychO [H]

Synonym: SbBS512_E1387

Alternate gene names: 187730867

Gene position: 1263325-1264719 (Clockwise)

Preceding gene: 187730621

Following gene: 187732170

Centisome position: 27.37

GC content: 50.61

Gene sequence:

>1395_bases
TTGAGCCGTTTCGTTCCTCGCATTATCCCGTTTTATTTACTCTTGCTTGTAGCAGGCGGTACAGCTAACGCACAATCTAC
CTTCGAGCAAAAAGCGGCAAATCCCTTTGATAATAACAATGATGGTCTGCCGGATTTAGGCATGGCTCCCGAAAATCATG
ATGGGGAAAAACACTTTGCTGAAATTGTGAAAGATTTCGGCGAAACCAGTATGAATGATAACGGGCTGGATACTGGCGAG
CAGGCAAAAGCTTTCGCATTGGGAAAAGTCCGCGACGCGCTTAGTCAACAGGTTAATCAGCACGTAGAGTCCTGGCTATC
ACCGTGGGGAAATGCCAGTGTTGACGTCAAAGTGGATAACGAAGGACATTTCACCGGCAGTCGTGGAAGCTGGTTTGTGC
CGTTACAAGATAATGATCGTTATCTCACCTGGAGCCAGCTTGGTCTTACTCTGCAGGATAATGGGTTGGTGAGCAATGTG
GGCGTTGGGCAACGCTGGGCGCGCGGCAACTGGCTGGTGGGTTATAACACTTTTTATGACAACTTGCTGGACGAAAATCT
TCAGCGAGCGGGCTTTGGTGCCGAAGCGTGGGGCGAATATTTGCGATTATTGGCAAACTTTTATCAGCCGTTTGCTGCAT
GGCATGAACAGACAGCCACGCAGGAACAACGGATGGCGCGCGGGTACGACCTGACAGCTCGGATGCGCATGCCGTTCTAT
CAACACCTCAATACCAGTGTCAGCCTAGAACAGTATTTTGGTGATCGTGTTGATTTGTTTAACTCTGGTACGGGTTATCA
CAATCCCGTCGCGTTGAGTCTGGGATTAAATTACACCCCTGTGCCATTAGTCACTGTGACGGCCCAGCATAAACAGGGTG
AAAGTGGCGAGAATCAAAATAACCTCGGGCTGAATCTTAATTACCGCTTTGGTGTACCGCTCAAAAAACAACTTTCTGCG
GGCGAGGTTGCCGAAAGTCAGTCGTTACGTGGTAGTCGCTATGACAATCCGCAGCGAAATAATCTACCGACTCTTGAGTA
CCGACAGCGAAAAACGTTAACGGTGTTTCTGGCGACACCGCCGTGGGATCTAAAACCTGGCGAAACAGTGCCGCTGAAAT
TACAAATCCGCAGTCGTTACGGTATTCGGCAACTGATTTGGCAGGGCGATACGCAGATATTAAGTTTGACGCCGGGCGCA
CAAGCCAACAGCGCGGAGGGCTGGACGCTGATCATGCCTGACTGGCAGAACGGGGAAGGGGCAAGCAATCACTGGCGATT
GTCGGTGGTGGTGGAAGATAACCAGGGGCAGCGTGTCTCCTCCAATGAGATCACGCTAACGCTTGTCGAACCGTTCGATG
CATTGTCAAACGACGAACTGCGCTGGGAACCGTAA

Upstream 100 bases:

>100_bases
AAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTCATTAT
TACCGGAAGTTACCGACGTT

Downstream 100 bases:

>100_bases
TCAGAAAATGCGCTCCTGATGCACCCATACCGCTGCTTCCACGCGAGACTTGAGTTTCATTTTCTTCAGCATGTGCTTGA
CGTGCACTTTTACTGTGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 464; Mature: 463

Protein sequence:

>464_residues
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGE
QAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTLQDNGLVSNV
GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY
QHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSA
GEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGA
QANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP

Sequences:

>Translated_464_residues
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGE
QAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTLQDNGLVSNV
GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY
QHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSA
GEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGA
QANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
>Mature_463_residues
SRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQ
AKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTLQDNGLVSNVG
VGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQ
HLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAG
EVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQ
ANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the intimin/invasin family [H]

Homologues:

Organism=Escherichia coli, GI145693120, Length=464, Percent_Identity=99.5689655172414, Blast_Score=946, Evalue=0.0,
Organism=Escherichia coli, GI145693153, Length=361, Percent_Identity=32.1329639889197, Blast_Score=169, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 52111; Mature: 51980

Theoretical pI: Translated: 4.97; Mature: 4.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFA
CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
EIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDN
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
EGHFTGSRGSWFVPLQDNDRYLTWSQLGLTLQDNGLVSNVGVGQRWARGNWLVGYNTFYD
CCCEECCCCCEEEEECCCCCEEEHHHCCEEEECCCEEECCCCCCEECCCCEEEEEHHHHH
NLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHH
QHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQN
HHCCCCEEHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCC
NLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATP
CCEEEEEEEECCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECC
PWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEG
CCCCCCCCEEEEEEEECCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCC
ASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
CCCEEEEEEEEECCCCCEECCCCEEEEEECCCCCCCCCCEEECC
>Mature Secondary Structure 
SRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLPDLGMAPENHDGEKHFA
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
EIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHVESWLSPWGNASVDVKVDN
HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECC
EGHFTGSRGSWFVPLQDNDRYLTWSQLGLTLQDNGLVSNVGVGQRWARGNWLVGYNTFYD
CCCEECCCCCEEEEECCCCCEEEHHHCCEEEECCCEEECCCCCCEECCCCEEEEEHHHHH
NLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQTATQEQRMARGYDLTARMRMPFY
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCHH
QHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQN
HHCCCCEEHHHHCCCCEEEECCCCCCCCCEEEEECCCCCCCEEEEEEECCCCCCCCCCCC
NLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATP
CCEEEEEEEECCCHHHHCCCCHHHHHHCCCCCCCCCCCCCCCCCCEECCCCEEEEEEECC
PWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEG
CCCCCCCCEEEEEEEECCCCCHHHHHCCCCCEEEEECCCCCCCCCCCEEEECCCCCCCCC
ASNHWRLSVVVEDNQGQRVSSNEITLTLVEPFDALSNDELRWEP
CCCEEEEEEEEECCCCCEECCCCEEEEEECCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 2657652; 2649492; 7567469 [H]