| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is xylE [H]
Identifier: 187730615
GI number: 187730615
Start: 4243480
End: 4244274
Strand: Reverse
Name: xylE [H]
Synonym: SbBS512_E4538
Alternate gene names: 187730615
Gene position: 4244274-4243480 (Counterclockwise)
Preceding gene: 187730876
Following gene: 187730394
Centisome position: 91.95
GC content: 52.33
Gene sequence:
>795_bases ATGTCACGCGGCAAGCAAGAACAGGCGGAAAGTATCCTGCGCAAAATTATGGGCAACACGCTTGCAACTCAGGCAGTACA GGAAATTAAACACTCCCTGGATCATGGCCGCAAAACCGGTGGTCGTCTGCTGATGTTTGGCGTGGGCGTGATTGTCATCG GCGTTATGCTCTCCATCTTCCAGCAATTTGTCGGCATCAATGTGGTGCTGTACTACGCGCCGGAAGTGTTCAAAACGCTG GGGGCCAGCACGGATATCGCGCTGTTGCAGACCATTATTGTCGGAGTTATCAACCTCACCTTCACCGTTCTGGCAATTAT GACGGTGGATAAATTTGGTCGTAAGCCACTGCAAATTATCGGCGCACTCGGAATGGCAATCGGTATGTTTAGCCTCGGTA CCGCGTTTTACACTCAGGCACCGGGTATTGTGGCGCTACTGTCGATGCTGTTCTATGTTGCTGCCTTTGCCATGTCCTGG GGTCCGGTATGCTGGGTACTGCTGTCGGAAATCTTCCCGAATGCTATTCGTGGTAAGGCGCTGGCAATCGCGGTGGCGGC CCAGTGGCTGGCGAACTACTTCGTCTCCTGGACCTTCCCGATGATGGACAAAAACTCCTGGCTGGTGGCCCATTTCCACA ACGGTTTCTCCTACTGGATTTACGGGTGTATGGGCGTTCTGGCAGCACTATTTATGTGGAAATTTGTCCCGGAAACCAAA GGTAAAACCCTTGAGGAGCTGGAAGCCCTCTGGGAACCGGAAACGAAGAAAACACAACAAACTGCTACGCTGTAA
Upstream 100 bases:
>100_bases AGGACATCTGATGGAAATGGAAGCCACGCAAGCACCTTAAAATCACCATCATACACTAAATCAGTAAGTTGGCAGCATTA CCGAAAGTCCTCGCTGGCTG
Downstream 100 bases:
>100_bases TCTTCCTGTCCAGCACGCCGCGCCAGTTCGGCGTGCTGTCTTTTTACTCCCGCTTCAGCCGTTTCGAATTACACAGCCAC AGAGTGATCACCAGTAACAG
Product: D-xylose-proton symporter
Products: NA
Alternate protein names: D-xylose transporter [H]
Number of amino acids: Translated: 264; Mature: 263
Protein sequence:
>264_residues MSRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK GKTLEELEALWEPETKKTQQTATL
Sequences:
>Translated_264_residues MSRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTL GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK GKTLEELEALWEPETKKTQQTATL >Mature_263_residues SRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWG PVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG KTLEELEALWEPETKKTQQTATL
Specific function: Uptake of D-xylose across the boundary membrane with the concomitant transport of protons into the cell (symport system) [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI23592238, Length=276, Percent_Identity=29.3478260869565, Blast_Score=115, Evalue=3e-26, Organism=Homo sapiens, GI5902090, Length=276, Percent_Identity=28.9855072463768, Blast_Score=114, Evalue=7e-26, Organism=Homo sapiens, GI166795299, Length=259, Percent_Identity=28.5714285714286, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI4557851, Length=268, Percent_Identity=27.6119402985075, Blast_Score=108, Evalue=5e-24, Organism=Homo sapiens, GI21361449, Length=226, Percent_Identity=32.7433628318584, Blast_Score=107, Evalue=1e-23, Organism=Homo sapiens, GI4507011, Length=222, Percent_Identity=27.4774774774775, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI134053883, Length=266, Percent_Identity=23.3082706766917, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI223029432, Length=292, Percent_Identity=24.6575342465753, Blast_Score=85, Evalue=6e-17, Organism=Homo sapiens, GI13540547, Length=104, Percent_Identity=40.3846153846154, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI223029430, Length=263, Percent_Identity=24.3346007604563, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI21553331, Length=108, Percent_Identity=37.962962962963, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI47933387, Length=199, Percent_Identity=23.1155778894472, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI47933389, Length=199, Percent_Identity=23.1155778894472, Blast_Score=71, Evalue=9e-13, Organism=Escherichia coli, GI1790463, Length=264, Percent_Identity=99.6212121212121, Blast_Score=536, Evalue=1e-154, Organism=Escherichia coli, GI1789312, Length=250, Percent_Identity=34.8, Blast_Score=129, Evalue=2e-31, Organism=Escherichia coli, GI1789207, Length=260, Percent_Identity=30.7692307692308, Blast_Score=114, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17534705, Length=267, Percent_Identity=30.7116104868914, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17534703, Length=267, Percent_Identity=30.7116104868914, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI25148667, Length=254, Percent_Identity=31.8897637795276, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17568103, Length=223, Percent_Identity=24.2152466367713, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6320007, Length=205, Percent_Identity=32.1951219512195, Blast_Score=116, Evalue=4e-27, Organism=Saccharomyces cerevisiae, GI6323110, Length=216, Percent_Identity=31.0185185185185, Blast_Score=110, Evalue=2e-25, Organism=Saccharomyces cerevisiae, GI6320766, Length=220, Percent_Identity=28.6363636363636, Blast_Score=107, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6324400, Length=220, Percent_Identity=28.6363636363636, Blast_Score=107, Evalue=2e-24, Organism=Saccharomyces cerevisiae, GI6321888, Length=274, Percent_Identity=29.5620437956204, Blast_Score=106, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6320552, Length=274, Percent_Identity=29.1970802919708, Blast_Score=106, Evalue=3e-24, Organism=Saccharomyces cerevisiae, GI6320549, Length=216, Percent_Identity=29.6296296296296, Blast_Score=105, Evalue=8e-24, Organism=Saccharomyces cerevisiae, GI6320550, Length=216, Percent_Identity=29.6296296296296, Blast_Score=105, Evalue=9e-24, Organism=Saccharomyces cerevisiae, GI6322247, Length=215, Percent_Identity=30.6976744186047, Blast_Score=104, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6319956, Length=220, Percent_Identity=29.5454545454545, Blast_Score=104, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6320063, Length=207, Percent_Identity=31.4009661835749, Blast_Score=103, Evalue=2e-23, Organism=Saccharomyces cerevisiae, GI6322618, Length=220, Percent_Identity=29.5454545454545, Blast_Score=103, Evalue=4e-23, Organism=Saccharomyces cerevisiae, GI6324011, Length=208, Percent_Identity=31.25, Blast_Score=101, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6322242, Length=215, Percent_Identity=29.7674418604651, Blast_Score=101, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6324417, Length=215, Percent_Identity=29.7674418604651, Blast_Score=101, Evalue=1e-22, Organism=Saccharomyces cerevisiae, GI6321100, Length=220, Percent_Identity=28.6363636363636, Blast_Score=100, Evalue=3e-22, Organism=Saccharomyces cerevisiae, GI6321886, Length=273, Percent_Identity=27.4725274725275, Blast_Score=98, Evalue=1e-21, Organism=Saccharomyces cerevisiae, GI6323653, Length=213, Percent_Identity=28.6384976525822, Blast_Score=95, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6321884, Length=214, Percent_Identity=28.5046728971963, Blast_Score=92, Evalue=7e-20, Organism=Saccharomyces cerevisiae, GI6320595, Length=226, Percent_Identity=28.3185840707965, Blast_Score=88, Evalue=2e-18, Organism=Saccharomyces cerevisiae, GI6321068, Length=228, Percent_Identity=25.4385964912281, Blast_Score=85, Evalue=1e-17, Organism=Saccharomyces cerevisiae, GI6324469, Length=217, Percent_Identity=28.110599078341, Blast_Score=84, Evalue=3e-17, Organism=Saccharomyces cerevisiae, GI6320705, Length=217, Percent_Identity=27.6497695852535, Blast_Score=79, Evalue=5e-16, Organism=Saccharomyces cerevisiae, GI6319718, Length=260, Percent_Identity=25.7692307692308, Blast_Score=69, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6321334, Length=180, Percent_Identity=22.2222222222222, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6320745, Length=233, Percent_Identity=23.175965665236, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI24652793, Length=253, Percent_Identity=31.6205533596838, Blast_Score=134, Evalue=7e-32, Organism=Drosophila melanogaster, GI24652795, Length=253, Percent_Identity=31.6205533596838, Blast_Score=134, Evalue=7e-32, Organism=Drosophila melanogaster, GI24652789, Length=205, Percent_Identity=35.609756097561, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI24652791, Length=276, Percent_Identity=30.0724637681159, Blast_Score=128, Evalue=5e-30, Organism=Drosophila melanogaster, GI17737451, Length=256, Percent_Identity=29.296875, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI24652312, Length=256, Percent_Identity=29.296875, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI24663511, Length=207, Percent_Identity=31.8840579710145, Blast_Score=105, Evalue=4e-23, Organism=Drosophila melanogaster, GI24663515, Length=255, Percent_Identity=29.4117647058824, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI24663519, Length=255, Percent_Identity=29.4117647058824, Blast_Score=104, Evalue=5e-23, Organism=Drosophila melanogaster, GI20130083, Length=257, Percent_Identity=29.1828793774319, Blast_Score=103, Evalue=1e-22, Organism=Drosophila melanogaster, GI161080353, Length=258, Percent_Identity=26.3565891472868, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI161078056, Length=262, Percent_Identity=28.6259541984733, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI21357295, Length=262, Percent_Identity=28.6259541984733, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI24654932, Length=263, Percent_Identity=25.8555133079848, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI17737517, Length=263, Percent_Identity=25.8555133079848, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI161080349, Length=258, Percent_Identity=26.7441860465116, Blast_Score=102, Evalue=3e-22, Organism=Drosophila melanogaster, GI161080351, Length=270, Percent_Identity=25.9259259259259, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI24644448, Length=223, Percent_Identity=26.9058295964126, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI24644446, Length=223, Percent_Identity=26.9058295964126, Blast_Score=84, Evalue=1e-16, Organism=Drosophila melanogaster, GI17933702, Length=197, Percent_Identity=24.3654822335025, Blast_Score=80, Evalue=2e-15, Organism=Drosophila melanogaster, GI24640302, Length=271, Percent_Identity=27.6752767527675, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI24640300, Length=271, Percent_Identity=27.6752767527675, Blast_Score=78, Evalue=5e-15, Organism=Drosophila melanogaster, GI45552195, Length=207, Percent_Identity=29.951690821256, Blast_Score=77, Evalue=9e-15, Organism=Drosophila melanogaster, GI17864324, Length=263, Percent_Identity=24.3346007604563, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24653937, Length=226, Percent_Identity=26.1061946902655, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI17647965, Length=194, Percent_Identity=24.7422680412371, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24585912, Length=261, Percent_Identity=22.2222222222222, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24585914, Length=261, Percent_Identity=22.2222222222222, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI161076658, Length=210, Percent_Identity=25.7142857142857, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 - InterPro: IPR003663 - InterPro: IPR005829 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 29160; Mature: 29029
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIF CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH QQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII HHHHHHHHHEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHH LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC GKTLEELEALWEPETKKTQQTATL CCHHHHHHHHHCCCHHHHHHHCCC >Mature Secondary Structure SRGKQEQAESILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIF CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH QQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQII HHHHHHHHHEEECHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH GALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKA HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHH LAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK HHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCC GKTLEELEALWEPETKKTQQTATL CCHHHHHHHHHCCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]