| Definition | Shigella boydii CDC 3083-94 chromosome, complete genome. |
|---|---|
| Accession | NC_010658 |
| Length | 4,615,997 |
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The map label for this gene is mcbA [H]
Identifier: 187730464
GI number: 187730464
Start: 2345962
End: 2346366
Strand: Direct
Name: mcbA [H]
Synonym: SbBS512_E2544
Alternate gene names: 187730464
Gene position: 2345962-2346366 (Clockwise)
Preceding gene: 187732813
Following gene: 187730962
Centisome position: 50.82
GC content: 46.91
Gene sequence:
>405_bases ATGCATGTCATTGATTTGTCTTATTTTGTAAAAATATATCGTTCAAAAAATAAGCACACCTCTGTCAATTTTTTGCGTCA TTTGCATCGCGCAGGCGACCTACACTTATCAGGCACTACCCGTTGTATTTATGAGGATGTCATTATGAAAAAGTGCCTCA CACTACTGATTGCCACCGTCCTGAGCGGAATCTCTCTCACGGCTTATGCCGCGCAACCGATGAGTAACCTGGACAGCGGT CAGCTACGGCCCGCCGGTACCGTTTCGGCAACTGGCGCATCAAACCTAAGCGATCTGGAGGATAAACTGGCAGAAAAAGC GCGCGAACAAGGCGCGAAAGGTTATGTCATTAATTCCGCAGGCGGAAATGACCAGATGTTCGGTACTGCAACCATCTACA AATAA
Upstream 100 bases:
>100_bases CCCGCATAACGCGACAGGGTAAATATCTGGCTGCGTTTATCATTCCCCAAAACCTTAACATGGCTATGGTTTATGGCAAT TCATCATAAAAATCAGCATT
Downstream 100 bases:
>100_bases CCCCACCAACGTAACTGCATTCGCCTCTGGATGCAGTTTTCGCCTGTTTTGTAATCAAAAAACATCAAATATGAACTCAA TGTAAATAAATGTATTTCTT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 134; Mature: 134
Protein sequence:
>134_residues MHVIDLSYFVKIYRSKNKHTSVNFLRHLHRAGDLHLSGTTRCIYEDVIMKKCLTLLIATVLSGISLTAYAAQPMSNLDSG QLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK
Sequences:
>Translated_134_residues MHVIDLSYFVKIYRSKNKHTSVNFLRHLHRAGDLHLSGTTRCIYEDVIMKKCLTLLIATVLSGISLTAYAAQPMSNLDSG QLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK >Mature_134_residues MHVIDLSYFVKIYRSKNKHTSVNFLRHLHRAGDLHLSGTTRCIYEDVIMKKCLTLLIATVLSGISLTAYAAQPMSNLDSG QLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK
Specific function: Affects biofilm formation and mucoidy [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BhsA/McbA family [H]
Homologues:
Organism=Escherichia coli, GI87081785, Length=86, Percent_Identity=100, Blast_Score=175, Evalue=9e-46, Organism=Escherichia coli, GI1787355, Length=86, Percent_Identity=43.0232558139535, Blast_Score=68, Evalue=2e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010854 [H]
Pfam domain/function: PF07338 DUF1471 [H]
EC number: NA
Molecular weight: Translated: 14564; Mature: 14564
Theoretical pI: Translated: 9.41; Mature: 9.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHVIDLSYFVKIYRSKNKHTSVNFLRHLHRAGDLHLSGTTRCIYEDVIMKKCLTLLIATV CEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHH LSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSA HCCCCHHHHHCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC GGNDQMFGTATIYK CCCCCCEEEEEECC >Mature Secondary Structure MHVIDLSYFVKIYRSKNKHTSVNFLRHLHRAGDLHLSGTTRCIYEDVIMKKCLTLLIATV CEEEHHHHHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHHHHHHHHH LSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDKLAEKAREQGAKGYVINSA HCCCCHHHHHCCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC GGNDQMFGTATIYK CCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]