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The map label for this gene is ybdK [C]

Identifier: 186477808

GI number: 186477808

Start: 3440191

End: 3441306

Strand: Reverse

Name: ybdK [C]

Synonym: Bphy_3064

Alternate gene names: 186477808

Gene position: 3441306-3440191 (Counterclockwise)

Preceding gene: 186477809

Following gene: 186477807

Centisome position: 98.91

GC content: 60.57

Gene sequence:

>1116_bases
ATGTCACTCGAAGCCTTCGTCGATTCGAAACCGTTCACCTTCGGTGTCGAACTCGAGATGCAGATCGTCAACACCCATGA
CTATGATCTGACCAAAGCGGGAACCGACCTGCTTCGGCTCATCAAGGACGAGAAGATTCCGGGCAACATCACGCCGGAAA
TCACGGAAAGCATGATCGAGCTGTCGACGGGCATCTGCACGTCGCATGAACAGGCCGTCGCCGATCTGCGCACGATCCGC
GATGTGCTCGTCGCCGCGGCCGACCGGCTGAACGTCGGGCTGTGCGGCGGCGGCACGCACGCTTTCCAGCAATGGAGCGA
GCGGCAGATCGTCGACACGCCCCGTTTTCAATACCTTTCGGAACTCTACGGATACCTTGCGAAGCAGTTCACGGTGTTCG
GCCAGCACGTGCACATCGGCTGTCCGGATGCCGACAGCGCATTGTTCCTGCTGCATTCGATGTCGCGCTTCATTCCGCAC
TTCATCGCGCTGTCGGCTTCGTCACCGTTCGTGCAGGGCGTCGACACCGGCTTTCATTCGGCACGCCTGAATTCCGTGTT
CGCGTTCCCGCTATCGGGCCGCGCGCCGTTCGTGCTCACGTGGGACAGCTTCGAAGAATACTTTTCGAAGATGGTCCACA
CGGGCGTCGTCAACAGCATGAAGGATTTCTACTGGGACATCCGGCCGAAGCCCGGCTTCGGCACCATCGAAGTCCGCGTG
ATGGACACGCCGTTGTCCGTCGATCGCGCGGCCGCGATCGCCTGCTACATCCAGACGCTCGCGCGTCACCTGCTGCTCGA
CAAGCCATTGACGCCGAAGGAAGATGACTACCTCGTCTACACGTTCAATCGCTTTGAAGCGTGCCGCTTCGGTCTCGCGG
GCACGTGTATCGATCCGCAGACGGGCGAGCGGCGCACGATTTCCGAAGATATCATCCAGACGCTCGAGCGCATTGCGCCG
CATGCGGATGCGCTAGGCTCGGGCAAGGCGCTCGAGGAAATCGGCGCGATTGCACGCGGTCAGGTGAACGATGCAACGTG
GTTGCGTAACGTGGTCGAACAGGAAAAGTCGCTCCATGAGGCCGTCCGGCAACAATGCCTGCAGTGGCGCGCATGA

Upstream 100 bases:

>100_bases
TTCACGCAGCTCATACATCTGGCTGCAGCATTCGACAGTCACTCCGGCGAGGCGCCGTCGACAACGGCCGCGCCTGCGCC
GACATGAATCAGGAAACGCC

Downstream 100 bases:

>100_bases
TCCGGGCGATGCGATTCGTTGCCGCTCGGTCCGGCAAACCGCGGCGGTGACGACTGAGCAAACCTCGACTGAACCCGCTT
CTTGCGGGTTTTTTATTTCT

Product: carboxylate-amine ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 371; Mature: 370

Protein sequence:

>371_residues
MSLEAFVDSKPFTFGVELEMQIVNTHDYDLTKAGTDLLRLIKDEKIPGNITPEITESMIELSTGICTSHEQAVADLRTIR
DVLVAAADRLNVGLCGGGTHAFQQWSERQIVDTPRFQYLSELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPH
FIALSASSPFVQGVDTGFHSARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRV
MDTPLSVDRAAAIACYIQTLARHLLLDKPLTPKEDDYLVYTFNRFEACRFGLAGTCIDPQTGERRTISEDIIQTLERIAP
HADALGSGKALEEIGAIARGQVNDATWLRNVVEQEKSLHEAVRQQCLQWRA

Sequences:

>Translated_371_residues
MSLEAFVDSKPFTFGVELEMQIVNTHDYDLTKAGTDLLRLIKDEKIPGNITPEITESMIELSTGICTSHEQAVADLRTIR
DVLVAAADRLNVGLCGGGTHAFQQWSERQIVDTPRFQYLSELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPH
FIALSASSPFVQGVDTGFHSARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRV
MDTPLSVDRAAAIACYIQTLARHLLLDKPLTPKEDDYLVYTFNRFEACRFGLAGTCIDPQTGERRTISEDIIQTLERIAP
HADALGSGKALEEIGAIARGQVNDATWLRNVVEQEKSLHEAVRQQCLQWRA
>Mature_370_residues
SLEAFVDSKPFTFGVELEMQIVNTHDYDLTKAGTDLLRLIKDEKIPGNITPEITESMIELSTGICTSHEQAVADLRTIRD
VLVAAADRLNVGLCGGGTHAFQQWSERQIVDTPRFQYLSELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPHF
IALSASSPFVQGVDTGFHSARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRVM
DTPLSVDRAAAIACYIQTLARHLLLDKPLTPKEDDYLVYTFNRFEACRFGLAGTCIDPQTGERRTISEDIIQTLERIAPH
ADALGSGKALEEIGAIARGQVNDATWLRNVVEQEKSLHEAVRQQCLQWRA

Specific function: ATP-dependent carboxylate-amine ligase [H]

COG id: COG2170

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carboxylate-amine ligase family [H]

Homologues:

Organism=Escherichia coli, GI1786795, Length=369, Percent_Identity=45.7994579945799, Blast_Score=360, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011793
- InterPro:   IPR006336 [H]

Pfam domain/function: PF04107 GCS2 [H]

EC number: NA

Molecular weight: Translated: 41509; Mature: 41377

Theoretical pI: Translated: 5.39; Mature: 5.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLEAFVDSKPFTFGVELEMQIVNTHDYDLTKAGTDLLRLIKDEKIPGNITPEITESMIE
CCCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LSTGICTSHEQAVADLRTIRDVLVAAADRLNVGLCGGGTHAFQQWSERQIVDTPRFQYLS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPHFIALSASSPFVQGVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHH
ARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRV
HHHCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARHLLLDKPLTPKEDDYLVYTFNRFEACRFGLAGTCIDPQ
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCC
TGERRTISEDIIQTLERIAPHADALGSGKALEEIGAIARGQVNDATWLRNVVEQEKSLHE
CCCCCCHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
AVRQQCLQWRA
HHHHHHHHCCC
>Mature Secondary Structure 
SLEAFVDSKPFTFGVELEMQIVNTHDYDLTKAGTDLLRLIKDEKIPGNITPEITESMIE
CCCCCCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
LSTGICTSHEQAVADLRTIRDVLVAAADRLNVGLCGGGTHAFQQWSERQIVDTPRFQYLS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEECCCHHHHHHHCCCCCCCCHHHHHHH
ELYGYLAKQFTVFGQHVHIGCPDADSALFLLHSMSRFIPHFIALSASSPFVQGVDTGFHS
HHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHH
ARLNSVFAFPLSGRAPFVLTWDSFEEYFSKMVHTGVVNSMKDFYWDIRPKPGFGTIEVRV
HHHCCEEEECCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEE
MDTPLSVDRAAAIACYIQTLARHLLLDKPLTPKEDDYLVYTFNRFEACRFGLAGTCIDPQ
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHHCCCCCCCCCCC
TGERRTISEDIIQTLERIAPHADALGSGKALEEIGAIARGQVNDATWLRNVVEQEKSLHE
CCCCCCHHHHHHHHHHHHCCCHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
AVRQQCLQWRA
HHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA