Definition Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence.
Accession NC_010622
Length 3,479,187

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The map label for this gene is 186477803

Identifier: 186477803

GI number: 186477803

Start: 3435306

End: 3435788

Strand: Reverse

Name: 186477803

Synonym: Bphy_3059

Alternate gene names: NA

Gene position: 3435788-3435306 (Counterclockwise)

Preceding gene: 186477804

Following gene: 186477800

Centisome position: 98.75

GC content: 58.18

Gene sequence:

>483_bases
ATGAGTTCACGCAGGATCGCTGTGCGTCAATCGGGCGTGCACGGCAAAGGCGTGTTTGCACTCGAACCGATCGCCGCCGG
CGATCGGCTGATCGAATATAAGGGCGAACGGATCTCGTGGAAGGAAGCGCTGCGACGACATCCCCACAATCCGGACGAGC
CGAATCACACGTTCTATTTCGCGCTCGATAGCGGTGATGTGATCGACGGCAAGGTGAAGGGCAATAGCGCGCGATGGATC
AACCACTCGTGCGCGCCCAACTGTGAAGCGGAAGAGATTGACGGCCATGTCTATATTGACGCGCTGCGCGACATCGAAGC
CGGCGAAGAACTGTTCTACGACTACGGGCTCGTGATCGACGCGCGTCAGACGAAGAAGCTGAAGAAGGAATACGAATGCC
GCTGCGGCGCGCGCAAGTGCCGCGGCACGATGCTTGCGCCGCCGGACAAGAAAGACGAGAAGAAATCGAAGAAGAAGAAG
TGA

Upstream 100 bases:

>100_bases
ATCCGCATCACGAAAGCCGTGCAGTTGTGGAGATGGCGCGAAACGCGGAAGCATCGGCAAACAGAGTTTGCTCATCCACC
GTTCTACAAGGATTGATTCA

Downstream 100 bases:

>100_bases
TTGAGGTGCGCTGCCGGACATAGAGCAACGGCAGCGCGCTCTGGCGATGAAGTTCAGAGATCGACCGGCGCATGCGCCGG
TTTTTTTGTTTCTCGAGCTG

Product: nuclear protein SET

Products: NA

Alternate protein names: Histone-Lysine N-Methyltransferase; SET Domain-Containing Protein; SET Domain Protein; Set Domain Protein; HistoNe-Lysine N-Methyltransferase H3 Lysine-4 Specific; Setd1a Protein; Nuclear Protein Set; Zinc Finger Protein

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MSSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYFALDSGDVIDGKVKGNSARWI
NHSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVIDARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK

Sequences:

>Translated_160_residues
MSSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYFALDSGDVIDGKVKGNSARWI
NHSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVIDARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK
>Mature_159_residues
SSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYFALDSGDVIDGKVKGNSARWIN
HSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVIDARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK

Specific function: Unknown

COG id: COG2940

COG function: function code R; Proteins containing SET domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI56550039, Length=144, Percent_Identity=38.8888888888889, Blast_Score=98, Evalue=4e-21,
Organism=Homo sapiens, GI110349788, Length=134, Percent_Identity=39.5522388059701, Blast_Score=92, Evalue=2e-19,
Organism=Homo sapiens, GI7662046, Length=144, Percent_Identity=38.1944444444444, Blast_Score=91, Evalue=4e-19,
Organism=Homo sapiens, GI210032580, Length=139, Percent_Identity=37.410071942446, Blast_Score=82, Evalue=3e-16,
Organism=Homo sapiens, GI91718902, Length=143, Percent_Identity=36.3636363636364, Blast_Score=81, Evalue=5e-16,
Organism=Homo sapiens, GI19913358, Length=136, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI19913350, Length=136, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI19913348, Length=136, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI109633019, Length=136, Percent_Identity=37.5, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI55741677, Length=146, Percent_Identity=32.1917808219178, Blast_Score=75, Evalue=2e-14,
Organism=Homo sapiens, GI23510384, Length=118, Percent_Identity=38.9830508474576, Blast_Score=73, Evalue=9e-14,
Organism=Homo sapiens, GI21361095, Length=118, Percent_Identity=38.9830508474576, Blast_Score=73, Evalue=9e-14,
Organism=Homo sapiens, GI19923202, Length=116, Percent_Identity=39.6551724137931, Blast_Score=72, Evalue=2e-13,
Organism=Homo sapiens, GI19923586, Length=135, Percent_Identity=34.8148148148148, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI27477095, Length=135, Percent_Identity=34.8148148148148, Blast_Score=69, Evalue=2e-12,
Organism=Homo sapiens, GI148762969, Length=143, Percent_Identity=34.2657342657343, Blast_Score=68, Evalue=3e-12,
Organism=Homo sapiens, GI13699811, Length=155, Percent_Identity=34.1935483870968, Blast_Score=67, Evalue=5e-12,
Organism=Homo sapiens, GI197313748, Length=159, Percent_Identity=30.188679245283, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI45356743, Length=111, Percent_Identity=37.8378378378378, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI156142199, Length=149, Percent_Identity=32.8859060402685, Blast_Score=65, Evalue=3e-11,
Organism=Homo sapiens, GI4507321, Length=163, Percent_Identity=30.0613496932515, Blast_Score=63, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17552316, Length=144, Percent_Identity=35.4166666666667, Blast_Score=83, Evalue=6e-17,
Organism=Caenorhabditis elegans, GI17552320, Length=146, Percent_Identity=34.9315068493151, Blast_Score=82, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI17552318, Length=146, Percent_Identity=34.9315068493151, Blast_Score=82, Evalue=9e-17,
Organism=Caenorhabditis elegans, GI193210440, Length=143, Percent_Identity=34.965034965035, Blast_Score=77, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI71993684, Length=140, Percent_Identity=33.5714285714286, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25148426, Length=137, Percent_Identity=37.956204379562, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI25148423, Length=137, Percent_Identity=37.956204379562, Blast_Score=71, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17565204, Length=161, Percent_Identity=31.055900621118, Blast_Score=65, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71988186, Length=138, Percent_Identity=35.5072463768116, Blast_Score=64, Evalue=3e-11,
Organism=Saccharomyces cerevisiae, GI6321911, Length=144, Percent_Identity=38.1944444444444, Blast_Score=91, Evalue=6e-20,
Organism=Saccharomyces cerevisiae, GI6322293, Length=147, Percent_Identity=31.9727891156463, Blast_Score=63, Evalue=2e-11,
Organism=Drosophila melanogaster, GI62472551, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=5e-20,
Organism=Drosophila melanogaster, GI17136558, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=5e-20,
Organism=Drosophila melanogaster, GI19550181, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=5e-20,
Organism=Drosophila melanogaster, GI19550184, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI17136556, Length=140, Percent_Identity=35, Blast_Score=94, Evalue=6e-20,
Organism=Drosophila melanogaster, GI17737643, Length=134, Percent_Identity=37.3134328358209, Blast_Score=84, Evalue=6e-17,
Organism=Drosophila melanogaster, GI24650756, Length=147, Percent_Identity=36.0544217687075, Blast_Score=83, Evalue=9e-17,
Organism=Drosophila melanogaster, GI24639197, Length=143, Percent_Identity=34.965034965035, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI28571451, Length=143, Percent_Identity=34.965034965035, Blast_Score=78, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24641786, Length=143, Percent_Identity=34.965034965035, Blast_Score=76, Evalue=9e-15,
Organism=Drosophila melanogaster, GI281360813, Length=143, Percent_Identity=34.965034965035, Blast_Score=76, Evalue=1e-14,
Organism=Drosophila melanogaster, GI161078181, Length=155, Percent_Identity=33.5483870967742, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI221331070, Length=116, Percent_Identity=37.9310344827586, Blast_Score=66, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24662251, Length=116, Percent_Identity=37.9310344827586, Blast_Score=66, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 18173; Mature: 18042

Theoretical pI: Translated: 8.95; Mature: 8.95

Prosite motif: PS50280 SET ; PS50868 POST_SET

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MSSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYF
CCCCEEEEEECCCCCCCEEEECCCCCCCEEEEECCCEECHHHHHHCCCCCCCCCCCEEEE
ALDSGDVIDGKVKGNSARWINHSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVID
EECCCCEEECEEECCCCEEECCCCCCCCCHHHCCCEEEEEEHHCCCCCHHHEECCCEEEE
ARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK
CHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
SSRRIAVRQSGVHGKGVFALEPIAAGDRLIEYKGERISWKEALRRHPHNPDEPNHTFYF
CCCEEEEEECCCCCCCEEEECCCCCCCEEEEECCCEECHHHHHHCCCCCCCCCCCEEEE
ALDSGDVIDGKVKGNSARWINHSCAPNCEAEEIDGHVYIDALRDIEAGEELFYDYGLVID
EECCCCEEECEEECCCCEEECCCCCCCCCHHHCCCEEEEEEHHCCCCCHHHEECCCEEEE
ARQTKKLKKEYECRCGARKCRGTMLAPPDKKDEKKSKKKK
CHHHHHHHHHHHHCCCCHHHCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA