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The map label for this gene is ycgR1 [H]

Identifier: 186477703

GI number: 186477703

Start: 3310048

End: 3310797

Strand: Direct

Name: ycgR1 [H]

Synonym: Bphy_2957

Alternate gene names: 186477703

Gene position: 3310048-3310797 (Clockwise)

Preceding gene: 186477702

Following gene: 186477704

Centisome position: 95.14

GC content: 61.73

Gene sequence:

>750_bases
ATGAATACCACCCAGTCGAATGGTGACAACCGCGAGACGGAAGGCGTCGACTTCGGCCGCCGCAATCCGCTTGAGATCGG
TGTGCAGTTGCGCAACCTGCTCAATCGCGGCGATTTTCTGACCGTGCAGTACAAGGGCGGGCAGCTCGTGACGAAGATTC
TCGAGGTGGACGTGCGCGAGCGAACGTTCACGTTCGACTGGGGCGCGCTCGCGGAGCAGAACCGAGGCTTGCTGTCATCG
CCCGAAGGCCATTTCCACGCGACGCCGGACGGCGTGCGAGTTCATTTCGTCACGCACACGCCACGCGAGACGACTTTCGA
GGGCCGTCCGTCGTTCGAGGCCGATTTCCCCGAGGTGCTCTATTACGTTCAGCGTCGCGAGTATTTTCGCGTCGATGCGC
CGCTGCTCGATCCGTACATTTGTCGTGGACGGCTGCCGGATGGCGAGGGCTTCCGCTTCGAGGTGCAGGATCTGTCACTG
GGAGGCATCGCGATGCGCACGAGCGACGAGCGCGTGACGTCGCTGGAGCACGGCGTGCAGCTGCTCGATACGGAGGTCAC
GCTTGGGGCGCTGGGGACGTTGCAGCTCGATCTCGAGTTGATGTCGAACCGGATTATCGAGCTGCCTAATGGTACGCAGC
GGTATACGTTGGGGTTCAGGTTTTTGTCCCTGCCGGGAAATGCCGAGAACACGCTTCAGCGGCTGATCACCCAGCTGGAG
ATGAAGCGGCGCTCATTGGTGCGCGCGTAA

Upstream 100 bases:

>100_bases
GGTCCCACGTGTGTTTCGCGACCGCTGCAGGCTGGGCTGAAACCTGGCTGGCCGTCTTCGCGCGACGTGCCCGCAAGAAC
GAAGAGAAATTGGCAAGGCC

Downstream 100 bases:

>100_bases
CTCATTTGTCTCTCTTCTCTCTGCTGGGCGGTAGTGGGGACCTTTCGGCGCGGGTAGGCCTTTTTGGTTTTGGTTTTGGT
TTTGCTTTTGGTTTTGCTTT

Product: YcgR family protein

Products: NA

Alternate protein names: Cyclic di-GMP binding protein YcgR 1 [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MNTTQSNGDNRETEGVDFGRRNPLEIGVQLRNLLNRGDFLTVQYKGGQLVTKILEVDVRERTFTFDWGALAEQNRGLLSS
PEGHFHATPDGVRVHFVTHTPRETTFEGRPSFEADFPEVLYYVQRREYFRVDAPLLDPYICRGRLPDGEGFRFEVQDLSL
GGIAMRTSDERVTSLEHGVQLLDTEVTLGALGTLQLDLELMSNRIIELPNGTQRYTLGFRFLSLPGNAENTLQRLITQLE
MKRRSLVRA

Sequences:

>Translated_249_residues
MNTTQSNGDNRETEGVDFGRRNPLEIGVQLRNLLNRGDFLTVQYKGGQLVTKILEVDVRERTFTFDWGALAEQNRGLLSS
PEGHFHATPDGVRVHFVTHTPRETTFEGRPSFEADFPEVLYYVQRREYFRVDAPLLDPYICRGRLPDGEGFRFEVQDLSL
GGIAMRTSDERVTSLEHGVQLLDTEVTLGALGTLQLDLELMSNRIIELPNGTQRYTLGFRFLSLPGNAENTLQRLITQLE
MKRRSLVRA
>Mature_249_residues
MNTTQSNGDNRETEGVDFGRRNPLEIGVQLRNLLNRGDFLTVQYKGGQLVTKILEVDVRERTFTFDWGALAEQNRGLLSS
PEGHFHATPDGVRVHFVTHTPRETTFEGRPSFEADFPEVLYYVQRREYFRVDAPLLDPYICRGRLPDGEGFRFEVQDLSL
GGIAMRTSDERVTSLEHGVQLLDTEVTLGALGTLQLDLELMSNRIIELPNGTQRYTLGFRFLSLPGNAENTLQRLITQLE
MKRRSLVRA

Specific function: Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Increasing levels of c-di-GMP lead to decreased motility [H]

COG id: COG5581

COG function: function code M; Predicted glycosyltransferase

Gene ontology:

Cell location: Bacterial flagellum basal body [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PilZ domain [H]

Homologues:

Organism=Escherichia coli, GI1787443, Length=231, Percent_Identity=32.9004329004329, Blast_Score=127, Evalue=9e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009875
- InterPro:   IPR009926 [H]

Pfam domain/function: PF07238 PilZ; PF07317 YcgR [H]

EC number: NA

Molecular weight: Translated: 28344; Mature: 28344

Theoretical pI: Translated: 5.42; Mature: 5.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTTQSNGDNRETEGVDFGRRNPLEIGVQLRNLLNRGDFLTVQYKGGQLVTKILEVDVRE
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC
RTFTFDWGALAEQNRGLLSSPEGHFHATPDGVRVHFVTHTPRETTFEGRPSFEADFPEVL
EEEEECCCCHHHHCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHH
YYVQRREYFRVDAPLLDPYICRGRLPDGEGFRFEVQDLSLGGIAMRTSDERVTSLEHGVQ
HHHHHHHEEEECCCCCCCHHHCCCCCCCCCCEEEEEEECCCCEEEECCCHHHHHHHHCCE
LLDTEVTLGALGTLQLDLELMSNRIIELPNGTQRYTLGFRFLSLPGNAENTLQRLITQLE
EEECEEEECCCEEEEEEHHHHCCCEEECCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHH
MKRRSLVRA
HHHHHHCCC
>Mature Secondary Structure
MNTTQSNGDNRETEGVDFGRRNPLEIGVQLRNLLNRGDFLTVQYKGGQLVTKILEVDVRE
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCC
RTFTFDWGALAEQNRGLLSSPEGHFHATPDGVRVHFVTHTPRETTFEGRPSFEADFPEVL
EEEEECCCCHHHHCCCCCCCCCCCEEECCCCEEEEEEEECCCCCCCCCCCCCCCCHHHHH
YYVQRREYFRVDAPLLDPYICRGRLPDGEGFRFEVQDLSLGGIAMRTSDERVTSLEHGVQ
HHHHHHHEEEECCCCCCCHHHCCCCCCCCCCEEEEEEECCCCEEEECCCHHHHHHHHCCE
LLDTEVTLGALGTLQLDLELMSNRIIELPNGTQRYTLGFRFLSLPGNAENTLQRLITQLE
EEECEEEECCCEEEEEEHHHHCCCEEECCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHH
MKRRSLVRA
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA