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The map label for this gene is oprF [H]

Identifier: 186477671

GI number: 186477671

Start: 3278587

End: 3280359

Strand: Reverse

Name: oprF [H]

Synonym: Bphy_2923

Alternate gene names: 186477671

Gene position: 3280359-3278587 (Counterclockwise)

Preceding gene: 186477673

Following gene: 186477669

Centisome position: 94.29

GC content: 66.44

Gene sequence:

>1773_bases
ATGAGTGTCGATGTGATTCAGTTGGTCCGGGCTGCGTTGCCGGAGGCGGTGGTTCGTCAGCTATCGAACTGTCTCGGTCT
GCCGTCGGAAGCGACGGCGAAAGTGATGGACGTGACCACGCCGGCGCTCGTCGCCGGTCTGCTGCACAAGTGCGCGACGC
TCGATGGCGCGCGCACGTTGTTCGCGAGCGTCCTCGGGCAGGAAGTCAACGCGGATATCGCCGAACAGCTGCCGCGCATT
TTCGCGAGCACCACGGGTGTCACGCAGTTGTCGTCGACGGGACGCCATCTGCTTGAACATCTGTTCGAGCGTCGCATCGA
CGGCCTGAGCGACACCGTGTCGATGCAAACGGGCGTGCCCGCGCACGCGACACACGCCGTCACGGGCATCGCGGGCGGCA
TCCTGATGGGCGTGCTCAAGCGCTACCTTCTCGATCATCAGGGCAATATCGGCCAGTTGCCGACCTTGCTCGGCCAGCAG
TTACCGCATATCGCGCCGTTTCTGAACGACGGCCTCACGACGGTGCTCGGTCTGGGCGCCGCAGCCGCTTTCGCCCAGAC
GATCGGTTCGCCGGTTCGCGCCGTGTCGTCGCATTTCGATCATCCGGCGGCGGAGCCCGCATCCGGGCGCGGCCCCGTCG
AGCCGACGTTGTCCGCGAAAGCGCCGGCTGTCGCGCAGCCCGCGCGCGAGGCGCGCGAAGTACGGCACGCCGGGCTCAAG
GCGCAGCAGTGGCTTGGCGTAGCGGCATTGTCCGCGCTGATCGGCGCATTGGCAGCGATGCTGACGTGGATCGCACTTGC
GTACTGTCCGTCGGCGACGGATTTCCTCGGCCGTCACGCAGTCGCGGCCGGTTCTGCCGTTGCAGACGCACCGGGCATGA
CGCAAGCCGCTGCCGAGCCGACGCCGTCGCAGACGGCACGCGCCGATGCCGCCAGCGTCTCAGGCAAAGTGGAGACGGAC
GCAGCACCAACACTGGCGAAGGATTCGACATTCATCGTTTCCGTCGATAAGAGCGGCAAGCCGACGATCACCGCGACCGT
CCGGAACGTCGCGGAAAGAGCGGAACTGCTGAACGCGCTGACGCGGAAATTCGGAGCCGGCAACTTCAACGCCGACATCA
CCATCGACGAAAGCCGCAACGCCGCCGACTGGCTCCCGCACCTCGACGCGCTGATGCCGCTGCTGGCGACGCCGGGCGCC
GAGATGAAGATCGACGGCACCAGGGTCGAGCTGAGCGGAGCGGCCGCCGATGCCAAAGCGGGCTGGCTCGACCGGCTGCA
GTCGCTGTTCGGTGCGCCGTATCAAGTGCGCGTGTTCGATCCCGCTCAAGCCGTCGCGGACGCCGCGCAGTCGTTCAGGA
ACGCAGCCAGGTCGCTGCTCGCGCCGGGCGCATCGTGTGCGACGACGGATCTCCTGAAGACGCTGAACCTTCAGGTGGTC
AATTTCGCGTCGAGCGATGCGCACGTGCCGCAGTCGGCATTCGACGATCTGGGCCAGTCCGCCAAACTGCTTCAGGCGTG
CGCGAAGAGCGGTCACGCGCTGAAGCTGGAAGTGGCTGGCTATTCGGATAACGTCGGCAGCGAGTCTGCGAATCGGGAGT
TGTCGAAAGAGCGCGCCGACGCGGTGCGTGCGTTCCTCGTGAAAGCCGGCGTGCCCGCCGATGCGCTCATCGCGCGCGGC
TACGGCAACGTGCGCGCCGTGGCGAGCAATGCGACGGAGAGCGGGCGTTTCGCGAATCGGCGGATCGAATTCACCGACGC
GCAAGCGCAGTAA

Upstream 100 bases:

>100_bases
AAATCGTTCATCGCTTCATTTCTGAGATCTTCACGCTCCTATAATCGCGCCCCAACGAAGGGCGCGTGGGCGCGCGTTCG
AAATTCAGGGAAACGAATCG

Downstream 100 bases:

>100_bases
GCGTCGTCCGCCGGCCAACCAACGCCGGACAGCATGCCGCCCGGTGCAGACCGTGCGGCATTTTCTATTTCAGCGACGGC
GTCGCTCGATCGGGCGACGC

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: Root adhesin [H]

Number of amino acids: Translated: 590; Mature: 589

Protein sequence:

>590_residues
MSVDVIQLVRAALPEAVVRQLSNCLGLPSEATAKVMDVTTPALVAGLLHKCATLDGARTLFASVLGQEVNADIAEQLPRI
FASTTGVTQLSSTGRHLLEHLFERRIDGLSDTVSMQTGVPAHATHAVTGIAGGILMGVLKRYLLDHQGNIGQLPTLLGQQ
LPHIAPFLNDGLTTVLGLGAAAAFAQTIGSPVRAVSSHFDHPAAEPASGRGPVEPTLSAKAPAVAQPAREAREVRHAGLK
AQQWLGVAALSALIGALAAMLTWIALAYCPSATDFLGRHAVAAGSAVADAPGMTQAAAEPTPSQTARADAASVSGKVETD
AAPTLAKDSTFIVSVDKSGKPTITATVRNVAERAELLNALTRKFGAGNFNADITIDESRNAADWLPHLDALMPLLATPGA
EMKIDGTRVELSGAAADAKAGWLDRLQSLFGAPYQVRVFDPAQAVADAAQSFRNAARSLLAPGASCATTDLLKTLNLQVV
NFASSDAHVPQSAFDDLGQSAKLLQACAKSGHALKLEVAGYSDNVGSESANRELSKERADAVRAFLVKAGVPADALIARG
YGNVRAVASNATESGRFANRRIEFTDAQAQ

Sequences:

>Translated_590_residues
MSVDVIQLVRAALPEAVVRQLSNCLGLPSEATAKVMDVTTPALVAGLLHKCATLDGARTLFASVLGQEVNADIAEQLPRI
FASTTGVTQLSSTGRHLLEHLFERRIDGLSDTVSMQTGVPAHATHAVTGIAGGILMGVLKRYLLDHQGNIGQLPTLLGQQ
LPHIAPFLNDGLTTVLGLGAAAAFAQTIGSPVRAVSSHFDHPAAEPASGRGPVEPTLSAKAPAVAQPAREAREVRHAGLK
AQQWLGVAALSALIGALAAMLTWIALAYCPSATDFLGRHAVAAGSAVADAPGMTQAAAEPTPSQTARADAASVSGKVETD
AAPTLAKDSTFIVSVDKSGKPTITATVRNVAERAELLNALTRKFGAGNFNADITIDESRNAADWLPHLDALMPLLATPGA
EMKIDGTRVELSGAAADAKAGWLDRLQSLFGAPYQVRVFDPAQAVADAAQSFRNAARSLLAPGASCATTDLLKTLNLQVV
NFASSDAHVPQSAFDDLGQSAKLLQACAKSGHALKLEVAGYSDNVGSESANRELSKERADAVRAFLVKAGVPADALIARG
YGNVRAVASNATESGRFANRRIEFTDAQAQ
>Mature_589_residues
SVDVIQLVRAALPEAVVRQLSNCLGLPSEATAKVMDVTTPALVAGLLHKCATLDGARTLFASVLGQEVNADIAEQLPRIF
ASTTGVTQLSSTGRHLLEHLFERRIDGLSDTVSMQTGVPAHATHAVTGIAGGILMGVLKRYLLDHQGNIGQLPTLLGQQL
PHIAPFLNDGLTTVLGLGAAAAFAQTIGSPVRAVSSHFDHPAAEPASGRGPVEPTLSAKAPAVAQPAREAREVRHAGLKA
QQWLGVAALSALIGALAAMLTWIALAYCPSATDFLGRHAVAAGSAVADAPGMTQAAAEPTPSQTARADAASVSGKVETDA
APTLAKDSTFIVSVDKSGKPTITATVRNVAERAELLNALTRKFGAGNFNADITIDESRNAADWLPHLDALMPLLATPGAE
MKIDGTRVELSGAAADAKAGWLDRLQSLFGAPYQVRVFDPAQAVADAAQSFRNAARSLLAPGASCATTDLLKTLNLQVVN
FASSDAHVPQSAFDDLGQSAKLLQACAKSGHALKLEVAGYSDNVGSESANRELSKERADAVRAFLVKAGVPADALIARGY
GNVRAVASNATESGRFANRRIEFTDAQAQ

Specific function: Known to stabilize the outer membrane [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 61153; Mature: 61022

Theoretical pI: Translated: 6.75; Mature: 6.75

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHCCCCHHHHHHCCCCCEEEEECCCCCCCCHHCCEEEECCCCCC
>Mature Secondary Structure 
SVDVIQLVRAALPEAVVRQLSNCLGLPSEATAKVMDVTTPALVAGLLHKCATLDGARTL
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHH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HHHHHHHHCCCCHHHHHHCCCCCEEEEECCCCCCCCHHCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1538702 [H]