| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186477654
Identifier: 186477654
GI number: 186477654
Start: 3260671
End: 3261435
Strand: Direct
Name: 186477654
Synonym: Bphy_2906
Alternate gene names: NA
Gene position: 3260671-3261435 (Clockwise)
Preceding gene: 186477653
Following gene: 186477655
Centisome position: 93.72
GC content: 63.66
Gene sequence:
>765_bases ATGCAGTCAACCGTCAACCTATGGCCGCTCATTGGAGTCGCGGTCATCATCATCGGGTTCTTGTTGCGCTTTAATCCAAT GCTGATCGTGGCCGCCGCCGCCGTCATCACCGCGATCGCCGCGCATTTTCCACCGGACAAGATTCTCGCCGCAATCGGCA GCGGCTTCATCAAGACGCGCAACATTCCCCTCATCATCCTGCTGCCGCTCGCGGTGATCGGTTTGCTCGAGCGGCACGGG CTGCGCGAGCGCGCGCAGGCGTGGATCGCGAGCATCAAGGCCGCGACGGCCGGGCGTCTCCTGATCGTCTATCTGCTCGT GCGCGAGTTGACTGCGGCCGTCGGTCTGACGGGTCTCGGCGGGCATCCGCAGATGGTGCGCCCGCTGATCGCGCCGATGG CGGAAGGCGCCACGGAGACGCGCTTCGGCAAGCTCACCGATGCAGTGCGCTACAAGCTGCGCGCGTTCTCGGCGGCGACC GACAACGTCGGTCTCTTCTTCGGCGAGGACATCTTCGTCGCGTTCGGCGCAATCGTGCTGATGGTCACGTTCCTGAGGGA AGCGGGCATCACCGTCGAGCCGATGCATGTCGCCGTGTGGGGCATTCCGACGGCCATTTGCGCGTTCCTGATTCACGGCT TCCGGCTGTATCTGCTCGATCGCAAGCTCGAACGCGAACTGCGCGGCAACGCGGCGAAACCGACTGGCGCAAACATCAAT AACAACACAACGGGCAAGCCCGCGACGACTGGGGACGAAGCATGA
Upstream 100 bases:
>100_bases GCACGCAACGAGGGCAACCGGGCCGACACGCATCGGCCGGATTCGTAAAGTTCGCCGCCACGAGCGGTGTCCCAATGCAG GACCACCTCTGGAGAGATCG
Downstream 100 bases:
>100_bases CACTCACCATCAACTATTTGTTCTGGCTGGTCGGCATCGTACTGCTGGTGATCGGCGGCATGATCGCCGTCGATCGCGAC CATCCGCGCCGCTTCACGGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 254; Mature: 254
Protein sequence:
>254_residues MQSTVNLWPLIGVAVIIIGFLLRFNPMLIVAAAAVITAIAAHFPPDKILAAIGSGFIKTRNIPLIILLPLAVIGLLERHG LRERAQAWIASIKAATAGRLLIVYLLVRELTAAVGLTGLGGHPQMVRPLIAPMAEGATETRFGKLTDAVRYKLRAFSAAT DNVGLFFGEDIFVAFGAIVLMVTFLREAGITVEPMHVAVWGIPTAICAFLIHGFRLYLLDRKLERELRGNAAKPTGANIN NNTTGKPATTGDEA
Sequences:
>Translated_254_residues MQSTVNLWPLIGVAVIIIGFLLRFNPMLIVAAAAVITAIAAHFPPDKILAAIGSGFIKTRNIPLIILLPLAVIGLLERHG LRERAQAWIASIKAATAGRLLIVYLLVRELTAAVGLTGLGGHPQMVRPLIAPMAEGATETRFGKLTDAVRYKLRAFSAAT DNVGLFFGEDIFVAFGAIVLMVTFLREAGITVEPMHVAVWGIPTAICAFLIHGFRLYLLDRKLERELRGNAAKPTGANIN NNTTGKPATTGDEA >Mature_254_residues MQSTVNLWPLIGVAVIIIGFLLRFNPMLIVAAAAVITAIAAHFPPDKILAAIGSGFIKTRNIPLIILLPLAVIGLLERHG LRERAQAWIASIKAATAGRLLIVYLLVRELTAAVGLTGLGGHPQMVRPLIAPMAEGATETRFGKLTDAVRYKLRAFSAAT DNVGLFFGEDIFVAFGAIVLMVTFLREAGITVEPMHVAVWGIPTAICAFLIHGFRLYLLDRKLERELRGNAAKPTGANIN NNTTGKPATTGDEA
Specific function: Unknown
COG id: COG3819
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27210; Mature: 27210
Theoretical pI: Translated: 10.51; Mature: 10.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQSTVNLWPLIGVAVIIIGFLLRFNPMLIVAAAAVITAIAAHFPPDKILAAIGSGFIKTR CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEC NIPLIILLPLAVIGLLERHGLRERAQAWIASIKAATAGRLLIVYLLVRELTAAVGLTGLG CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GHPQMVRPLIAPMAEGATETRFGKLTDAVRYKLRAFSAATDNVGLFFGEDIFVAFGAIVL CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH MVTFLREAGITVEPMHVAVWGIPTAICAFLIHGFRLYLLDRKLERELRGNAAKPTGANIN HHHHHHHCCCEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NNTTGKPATTGDEA CCCCCCCCCCCCCC >Mature Secondary Structure MQSTVNLWPLIGVAVIIIGFLLRFNPMLIVAAAAVITAIAAHFPPDKILAAIGSGFIKTR CCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCEEEC NIPLIILLPLAVIGLLERHGLRERAQAWIASIKAATAGRLLIVYLLVRELTAAVGLTGLG CCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC GHPQMVRPLIAPMAEGATETRFGKLTDAVRYKLRAFSAATDNVGLFFGEDIFVAFGAIVL CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHHHHH MVTFLREAGITVEPMHVAVWGIPTAICAFLIHGFRLYLLDRKLERELRGNAAKPTGANIN HHHHHHHCCCEECCHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC NNTTGKPATTGDEA CCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA