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The map label for this gene is ybgJ [H]

Identifier: 186477651

GI number: 186477651

Start: 3257923

End: 3258576

Strand: Direct

Name: ybgJ [H]

Synonym: Bphy_2903

Alternate gene names: 186477651

Gene position: 3257923-3258576 (Clockwise)

Preceding gene: 186477649

Following gene: 186477652

Centisome position: 93.64

GC content: 70.49

Gene sequence:

>654_bases
ATGACTGAAGCCCGCATCTTCCCGCTCGGCGACACCGCCCTCGTCTGCGAGGCGCCGCCGCCGGCCACGCTCGATTGCCA
GCGCCGCGTGTGGTCTACCGCGCAGGCAGCGCGCGAATGGCCGCACGTGCTCGAAGTCGTGCCGGGCATGAACAATCTCA
CCGTGATCTTCGATCCGCTCGAAGCCGATCCCGGCGACCTGGCCGCACGCCTCGCGGCCGCGTGGGACGCCGCCAGCGCC
GCGCCCGCCGAAGGCCGCGAAGTGGAGATTCCCGTGCAGTACGGCGGCGAGTACGGCCCGGACCTCAAAGCGGTCGCCGA
TTACACTGGGCTCACCGTGAACGAAGTCGTCGAGCGGCATGCGGGCGGCCACTACGTTGTCTTCTTTCTGGGCTTCCAGC
CGGGCTTCGCGTACATGGGCGGGCTCGAGGAAGCGCTGCACACACCGCGCCGCAGCGAGCCGCGGCTCGAAGTGCCCGCC
GGTTCGGTCGGCATCGGCGGCGCGCAGACGGGCATCTATCCGGCAACGTCGCCGGGCGGCTGGCAGCTGATCGGCCGCAC
GGCGCAGAAGCTGTTCGACCCGGCACGCAATCCGCCCACGCTCCTCCAACCGGGCGATCGCGTCCGCTTCACCATCGCGG
GGCTGCACGCATGA

Upstream 100 bases:

>100_bases
TTTTATTGAGAATGTACGCTAGCCTCTCGCGAGAGCCCGGCACGCATCGTCAGATGAATGCGGCTTCTCGCCCTAACCAG
CAACATGACACCAACCCGCG

Downstream 100 bases:

>100_bases
TCGACGTGATACGCGCGGGTCTTCTGACCACGATCCAGGATCTCGGCCGGCATGGTTACCGGCATCTCGGCGTCGCGATG
GGCGGCGCGCTCGACCGGCT

Product: allophanate hydrolase subunit 1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MTEARIFPLGDTALVCEAPPPATLDCQRRVWSTAQAAREWPHVLEVVPGMNNLTVIFDPLEADPGDLAARLAAAWDAASA
APAEGREVEIPVQYGGEYGPDLKAVADYTGLTVNEVVERHAGGHYVVFFLGFQPGFAYMGGLEEALHTPRRSEPRLEVPA
GSVGIGGAQTGIYPATSPGGWQLIGRTAQKLFDPARNPPTLLQPGDRVRFTIAGLHA

Sequences:

>Translated_217_residues
MTEARIFPLGDTALVCEAPPPATLDCQRRVWSTAQAAREWPHVLEVVPGMNNLTVIFDPLEADPGDLAARLAAAWDAASA
APAEGREVEIPVQYGGEYGPDLKAVADYTGLTVNEVVERHAGGHYVVFFLGFQPGFAYMGGLEEALHTPRRSEPRLEVPA
GSVGIGGAQTGIYPATSPGGWQLIGRTAQKLFDPARNPPTLLQPGDRVRFTIAGLHA
>Mature_216_residues
TEARIFPLGDTALVCEAPPPATLDCQRRVWSTAQAAREWPHVLEVVPGMNNLTVIFDPLEADPGDLAARLAAAWDAASAA
PAEGREVEIPVQYGGEYGPDLKAVADYTGLTVNEVVERHAGGHYVVFFLGFQPGFAYMGGLEEALHTPRRSEPRLEVPAG
SVGIGGAQTGIYPATSPGGWQLIGRTAQKLFDPARNPPTLLQPGDRVRFTIAGLHA

Specific function: Unknown

COG id: COG2049

COG function: function code E; Allophanate hydrolase subunit 1

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis ycsJ and yeast urea amidolyase (DUR1,2) [H]

Homologues:

Organism=Escherichia coli, GI1786929, Length=211, Percent_Identity=56.3981042654028, Blast_Score=238, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003833
- InterPro:   IPR020899
- InterPro:   IPR010016
- InterPro:   IPR002130 [H]

Pfam domain/function: PF02682 AHS1 [H]

EC number: NA

Molecular weight: Translated: 23135; Mature: 23004

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEARIFPLGDTALVCEAPPPATLDCQRRVWSTAQAAREWPHVLEVVPGMNNLTVIFDPL
CCCCEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEECC
EADPGDLAARLAAAWDAASAAPAEGREVEIPVQYGGEYGPDLKAVADYTGLTVNEVVERH
CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHC
AGGHYVVFFLGFQPGFAYMGGLEEALHTPRRSEPRLEVPAGSVGIGGAQTGIYPATSPGG
CCCEEEEEEEECCCCHHHHCCHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
WQLIGRTAQKLFDPARNPPTLLQPGDRVRFTIAGLHA
HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCC
>Mature Secondary Structure 
TEARIFPLGDTALVCEAPPPATLDCQRRVWSTAQAAREWPHVLEVVPGMNNLTVIFDPL
CCCEEEECCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCCCCEEEEEECC
EADPGDLAARLAAAWDAASAAPAEGREVEIPVQYGGEYGPDLKAVADYTGLTVNEVVERH
CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHCCCCCHHHHHHHC
AGGHYVVFFLGFQPGFAYMGGLEEALHTPRRSEPRLEVPAGSVGIGGAQTGIYPATSPGG
CCCEEEEEEEECCCCHHHHCCHHHHHCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC
WQLIGRTAQKLFDPARNPPTLLQPGDRVRFTIAGLHA
HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]