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The map label for this gene is ccsA [H]

Identifier: 186477553

GI number: 186477553

Start: 3157891

End: 3159108

Strand: Reverse

Name: ccsA [H]

Synonym: Bphy_2805

Alternate gene names: 186477553

Gene position: 3159108-3157891 (Counterclockwise)

Preceding gene: 186477554

Following gene: 186477552

Centisome position: 90.8

GC content: 61.33

Gene sequence:

>1218_bases
ATGGACCTGACCCAAGTTTCCTCATCCTCGCGCGCCAAGCCGCGCGTTGACACGGCAACGCATGCGACTGCGCATCTGCC
TGGCGAGACGTTGCTGGACGATCGTCCGTTCCTGAAGCGTCTCGGTTTGTTCGACTGGCTGTTCGCCCTGGCGATGGTGG
CGGGCGCGGGGTTCGCGCTGTCGCGCTATCACCCGTACATGAATTACTACGACAAGCTGGTGCTGGTCTGCACACTGCCC
GCCGGCGTCATCCTCGGCTGGCGATGGAAGCCGGCGCGTCTGTTGATGGCGTGTATCGCGGTGCTGTCGTTGTCGGCGAT
CCAGATTTACGGCGGCGACCTGACCCGCGCCGATCACGCGTTCTTCCTCAAGTATTTCCTGTCGAGCCAGTCGGCCATCC
TGTGGATGAGCGCGCTGTTCGTGCTGGCCACGCTGTTCTACTGGATCGGCACGCTGTCGCGTTCGCCGACGGGCGCCGCG
ATCGGTTCGAAGATGACGTGGGTGGCGGTGCTGATGGGCTTCGTCGGCCTGATGGTTCGCTGGTACGAGTCGTATCTCAT
CGGCTCGGACGTTGGGCACATTCCCATCTCGAACCTGTACGAAGTGTTCGTGCTGTTCAGTTTGATCACAGCATTGTTCT
ATCTGTACTACGAGCAGCATTACAACACGCGCTCGCTCGGCGCGTTCGTGCTGCTGGTGATCAGCGCGGCCGTCGGCTTC
CTGATGTGGTACTCGATCGCGCGCGACGCGCAGCAGATCCAGCCGCTCGTTCCCGCACTGCAAAGCTGGTGGATGAAGAT
TCACGTGCCGGCGAACTTCATCGGTTACGGAAGTTTCGCGCTGTCGGCGATGGTCGCGGTGGCATATCTGATGAAGGAAC
GCGGCGTTTTGTCCGACCGTCTGCCGACGCTCGACGTGCTCGACGACGTGATGTACAAGTCGATCGCCGTCGGTTTTGCA
TTCTTCACCATCGCGACGATTCTTGGCGCGCTGTGGGCCGCGGAAGCTTGGGGCGGCTACTGGAGCTGGGACCCGAAGGA
AACGTGGGCGCTGATCGTCTGGCTGAACTACGCAGCATGGCTGCACATGCGTCTGATGAAAGGCCTGCGCGGCGTGGCAG
CGGCTTGGTGGGCGTTGACGGGCCTCGTAGTGACGACTTTCGCATTTCTTGGCGTCAACATGTTTCTGTCGGGGCTGCAC
AGCTACGGCAAGCTGTAG

Upstream 100 bases:

>100_bases
GGCCATCCCGTCGACGCCGATCCCGCCCCCGAGGCAAGGGGCGCCGCCCGGGGTACGAGCGAGGCGCCCGCAGATTCATC
CGATTCGACCCGGTAAGCAC

Downstream 100 bases:

>100_bases
CAGTTGTATGCCTCGAAGCGTGAAAAAGCCGCCGCGTGCACTGCACCGGCGGTTTTTTTACGCCGTTATGGAAGGATCAC
GCGCTTCGTCTGTTAACGAA

Product: cytochrome c-type biogenesis protein CcsB

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 405; Mature: 405

Protein sequence:

>405_residues
MDLTQVSSSSRAKPRVDTATHATAHLPGETLLDDRPFLKRLGLFDWLFALAMVAGAGFALSRYHPYMNYYDKLVLVCTLP
AGVILGWRWKPARLLMACIAVLSLSAIQIYGGDLTRADHAFFLKYFLSSQSAILWMSALFVLATLFYWIGTLSRSPTGAA
IGSKMTWVAVLMGFVGLMVRWYESYLIGSDVGHIPISNLYEVFVLFSLITALFYLYYEQHYNTRSLGAFVLLVISAAVGF
LMWYSIARDAQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLMKERGVLSDRLPTLDVLDDVMYKSIAVGFA
FFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGVAAAWWALTGLVVTTFAFLGVNMFLSGLH
SYGKL

Sequences:

>Translated_405_residues
MDLTQVSSSSRAKPRVDTATHATAHLPGETLLDDRPFLKRLGLFDWLFALAMVAGAGFALSRYHPYMNYYDKLVLVCTLP
AGVILGWRWKPARLLMACIAVLSLSAIQIYGGDLTRADHAFFLKYFLSSQSAILWMSALFVLATLFYWIGTLSRSPTGAA
IGSKMTWVAVLMGFVGLMVRWYESYLIGSDVGHIPISNLYEVFVLFSLITALFYLYYEQHYNTRSLGAFVLLVISAAVGF
LMWYSIARDAQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLMKERGVLSDRLPTLDVLDDVMYKSIAVGFA
FFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGVAAAWWALTGLVVTTFAFLGVNMFLSGLH
SYGKL
>Mature_405_residues
MDLTQVSSSSRAKPRVDTATHATAHLPGETLLDDRPFLKRLGLFDWLFALAMVAGAGFALSRYHPYMNYYDKLVLVCTLP
AGVILGWRWKPARLLMACIAVLSLSAIQIYGGDLTRADHAFFLKYFLSSQSAILWMSALFVLATLFYWIGTLSRSPTGAA
IGSKMTWVAVLMGFVGLMVRWYESYLIGSDVGHIPISNLYEVFVLFSLITALFYLYYEQHYNTRSLGAFVLLVISAAVGF
LMWYSIARDAQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLMKERGVLSDRLPTLDVLDDVMYKSIAVGFA
FFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGVAAAWWALTGLVVTTFAFLGVNMFLSGLH
SYGKL

Specific function: Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment [H]

COG id: COG0755

COG function: function code O; ABC-type transport system involved in cytochrome c biogenesis, permease component

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR017562 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 45302; Mature: 45302

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTQVSSSSRAKPRVDTATHATAHLPGETLLDDRPFLKRLGLFDWLFALAMVAGAGFAL
CCCCCCCCCCCCCCCCCCHHCCHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
SRYHPYMNYYDKLVLVCTLPAGVILGWRWKPARLLMACIAVLSLSAIQIYGGDLTRADHA
HHHCHHHHHHHHHHHHHCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHEECCCCCHHHHH
FFLKYFLSSQSAILWMSALFVLATLFYWIGTLSRSPTGAAIGSKMTWVAVLMGFVGLMVR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHH
WYESYLIGSDVGHIPISNLYEVFVLFSLITALFYLYYEQHYNTRSLGAFVLLVISAAVGF
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LMWYSIARDAQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLMKERGVLSDR
HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHCC
LPTLDVLDDVMYKSIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
LHMRLMKGLRGVAAAWWALTGLVVTTFAFLGVNMFLSGLHSYGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLTQVSSSSRAKPRVDTATHATAHLPGETLLDDRPFLKRLGLFDWLFALAMVAGAGFAL
CCCCCCCCCCCCCCCCCCHHCCHHCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
SRYHPYMNYYDKLVLVCTLPAGVILGWRWKPARLLMACIAVLSLSAIQIYGGDLTRADHA
HHHCHHHHHHHHHHHHHCCCHHHEECCCCCHHHHHHHHHHHHHHHHHHEECCCCCHHHHH
FFLKYFLSSQSAILWMSALFVLATLFYWIGTLSRSPTGAAIGSKMTWVAVLMGFVGLMVR
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHHHHHHHHH
WYESYLIGSDVGHIPISNLYEVFVLFSLITALFYLYYEQHYNTRSLGAFVLLVISAAVGF
HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
LMWYSIARDAQQIQPLVPALQSWWMKIHVPANFIGYGSFALSAMVAVAYLMKERGVLSDR
HHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCHHCC
LPTLDVLDDVMYKSIAVGFAFFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH
LHMRLMKGLRGVAAAWWALTGLVVTTFAFLGVNMFLSGLHSYGKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA