Click here to switch to the map view.

The map label for this gene is yedY [H]

Identifier: 186477552

GI number: 186477552

Start: 3156712

End: 3157707

Strand: Reverse

Name: yedY [H]

Synonym: Bphy_2804

Alternate gene names: 186477552

Gene position: 3157707-3156712 (Counterclockwise)

Preceding gene: 186477553

Following gene: 186477551

Centisome position: 90.76

GC content: 60.44

Gene sequence:

>996_bases
ATGTGGATCAAGCGAAGCGAACGCAGCCAACTTTACGGCGACGACATCGCGCGCAGCGAGATCACGCCGCAGCGCGTGTT
CGAGAATCGCCGACGAATCCTGCAGGCGGCGGGTGCGGTCGCGCTCGGTGGCTTGATGGGCGTGCATGGCGAGGCATTCG
CGGCATATTCGTCGTCCGACCCGAAAGCGCAAAAGCTCGGCGCGAAGACCAATCCGAAGTTCGTTGTCACGGACAAGGTC
ACGCCGTACAAAGACATCACCACCTACAACAACTACTACGAGTTCGGCACCGACAAGAGCGACCCGGCACACAACGCGGG
CTCGCTGAGGCCGCACCCGTGGAAGGTGAGCGTCGAAGGCGAGGTGAACAACCCGAAGGTCTACGGCATCGATGAGTTGC
TGAAGCTCGCGCCGCTCGAAGAGCGCGTGTACCGGCTGCGCTGCGTCGAGGGCTGGTCGATGGTGATTCCGTGGATCGGC
ATTCCGCTGTCGGAAGTCATCAAGCGCGCGCAGCCGACGGCGAACGCAAAGTACGTGCAGTTCATCACCCTCGCCGATCC
GTCGCAGATGCCCGGCCTGTCCGAGCCGATTCTCGAATGGCCGTATTCCGAAGGGCTGCGGATGGACGAGGCGATGAATC
CGCTGACATTGCTGACGATGGGCGTCTACGGTCAGTTGCTGCCGAATCAGAACGGTGCGCCCGTGCGCATCATCGTGCCG
TGGAAGTACGGGTTCAAGAGTGCGAAGTCGCTCGTGAAAATCCGCTTCGTCGACAAGCAGCCGCCGACCAGCTGGAACAC
CTATGCGCCGAACGAGTACGGCTTTTATTCGAACGTGAATCCGAATGTCGATCATCCGCGCTGGAGCCAGGCGACGGAGC
GGCGCATCGGTGAGGACGGTTTCTTCACACCGAAGCGCAAGACGCTGATATACAACGGCTACGGCGATCTGGTCGCGTCG
ATGTATCAGGGCATGGATCTGAAGAAGAATTTTTGA

Upstream 100 bases:

>100_bases
CTTCGTCTGTTAACGAAACGACGAACGACGAACGGCGACTCGCAAGCGCGAGTCGAACGGATACCGATGGGCGTGCAATG
CCCGGCAAGGAGCTTTCAGC

Downstream 100 bases:

>100_bases
CGGCGGCGCGCATGGGAACCGACACGACACAAACGCTGACCGCAGGCAACGGCGCACGCACGGACGCCAAAGCCATGAAA
CCGGCGGCCGCGCCGCGCAA

Product: putative sulfite oxidase subunit YedY

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MWIKRSERSQLYGDDIARSEITPQRVFENRRRILQAAGAVALGGLMGVHGEAFAAYSSSDPKAQKLGAKTNPKFVVTDKV
TPYKDITTYNNYYEFGTDKSDPAHNAGSLRPHPWKVSVEGEVNNPKVYGIDELLKLAPLEERVYRLRCVEGWSMVIPWIG
IPLSEVIKRAQPTANAKYVQFITLADPSQMPGLSEPILEWPYSEGLRMDEAMNPLTLLTMGVYGQLLPNQNGAPVRIIVP
WKYGFKSAKSLVKIRFVDKQPPTSWNTYAPNEYGFYSNVNPNVDHPRWSQATERRIGEDGFFTPKRKTLIYNGYGDLVAS
MYQGMDLKKNF

Sequences:

>Translated_331_residues
MWIKRSERSQLYGDDIARSEITPQRVFENRRRILQAAGAVALGGLMGVHGEAFAAYSSSDPKAQKLGAKTNPKFVVTDKV
TPYKDITTYNNYYEFGTDKSDPAHNAGSLRPHPWKVSVEGEVNNPKVYGIDELLKLAPLEERVYRLRCVEGWSMVIPWIG
IPLSEVIKRAQPTANAKYVQFITLADPSQMPGLSEPILEWPYSEGLRMDEAMNPLTLLTMGVYGQLLPNQNGAPVRIIVP
WKYGFKSAKSLVKIRFVDKQPPTSWNTYAPNEYGFYSNVNPNVDHPRWSQATERRIGEDGFFTPKRKTLIYNGYGDLVAS
MYQGMDLKKNF
>Mature_331_residues
MWIKRSERSQLYGDDIARSEITPQRVFENRRRILQAAGAVALGGLMGVHGEAFAAYSSSDPKAQKLGAKTNPKFVVTDKV
TPYKDITTYNNYYEFGTDKSDPAHNAGSLRPHPWKVSVEGEVNNPKVYGIDELLKLAPLEERVYRLRCVEGWSMVIPWIG
IPLSEVIKRAQPTANAKYVQFITLADPSQMPGLSEPILEWPYSEGLRMDEAMNPLTLLTMGVYGQLLPNQNGAPVRIIVP
WKYGFKSAKSLVKIRFVDKQPPTSWNTYAPNEYGFYSNVNPNVDHPRWSQATERRIGEDGFFTPKRKTLIYNGYGDLVAS
MYQGMDLKKNF

Specific function: The exact function is not known. Can catalyze the reduction of a variety of substrates like dimethyl sulfoxide, trimethylamine N-oxide, phenylmethyl sulfoxide and L-methionine sulfoxide. Cannot reduce cyclic N-oxides. Shows no activity as sulfite oxidase

COG id: COG2041

COG function: function code R; Sulfite oxidase and related enzymes

Gene ontology:

Cell location: Periplasm. Note=Is attached to the inner membrane when interacting with the yedZ subunit (By similarity) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yedY family [H]

Homologues:

Organism=Escherichia coli, GI1788282, Length=328, Percent_Identity=50.9146341463415, Blast_Score=337, Evalue=9e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000572
- InterPro:   IPR006311
- InterPro:   IPR022867 [H]

Pfam domain/function: PF00174 Oxidored_molyb [H]

EC number: NA

Molecular weight: Translated: 37433; Mature: 37433

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWIKRSERSQLYGDDIARSEITPQRVFENRRRILQAAGAVALGGLMGVHGEAFAAYSSSD
CCCCCCCCCHHCCCHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEECCCC
PKAQKLGAKTNPKFVVTDKVTPYKDITTYNNYYEFGTDKSDPAHNAGSLRPHPWKVSVEG
CHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECC
EVNNPKVYGIDELLKLAPLEERVYRLRCVEGWSMVIPWIGIPLSEVIKRAQPTANAKYVQ
CCCCCEEECHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCEEEE
FITLADPSQMPGLSEPILEWPYSEGLRMDEAMNPLTLLTMGVYGQLLPNQNGAPVRIIVP
EEEECCCCCCCCCCCHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
WKYGFKSAKSLVKIRFVDKQPPTSWNTYAPNEYGFYSNVNPNVDHPRWSQATERRIGEDG
CCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
FFTPKRKTLIYNGYGDLVASMYQGMDLKKNF
CCCCCCCEEEECCHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MWIKRSERSQLYGDDIARSEITPQRVFENRRRILQAAGAVALGGLMGVHGEAFAAYSSSD
CCCCCCCCCHHCCCHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHCCCCCEEEEECCCC
PKAQKLGAKTNPKFVVTDKVTPYKDITTYNNYYEFGTDKSDPAHNAGSLRPHPWKVSVEG
CHHHHCCCCCCCCEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEEECC
EVNNPKVYGIDELLKLAPLEERVYRLRCVEGWSMVIPWIGIPLSEVIKRAQPTANAKYVQ
CCCCCEEECHHHHHHHCCHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHCCCCCCCEEEE
FITLADPSQMPGLSEPILEWPYSEGLRMDEAMNPLTLLTMGVYGQLLPNQNGAPVRIIVP
EEEECCCCCCCCCCCHHHHCCCCCCCCHHHHCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
WKYGFKSAKSLVKIRFVDKQPPTSWNTYAPNEYGFYSNVNPNVDHPRWSQATERRIGEDG
CCCCHHHHCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCC
FFTPKRKTLIYNGYGDLVASMYQGMDLKKNF
CCCCCCCEEEECCHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Mo [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA