| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
Click here to switch to the map view.
The map label for this gene is ytfP [H]
Identifier: 186477485
GI number: 186477485
Start: 3092068
End: 3093336
Strand: Direct
Name: ytfP [H]
Synonym: Bphy_2737
Alternate gene names: 186477485
Gene position: 3092068-3093336 (Clockwise)
Preceding gene: 186477483
Following gene: 186477493
Centisome position: 88.87
GC content: 66.35
Gene sequence:
>1269_bases ATGTCGAAATCGCCCGAAATCACTGCGGATCACGTCCGCGTCGCCGTCGTCGGCGGCGGCCCTGCGGGGCTGATGGCCGC CGAAGCGCTGGCTCGCGGCGGCGTGCGCGTCGACGTCTACGACGCGATGCCGTCCGTCGGCCGCAAGTTTCTGATGGCGG GTAAGGGCGGGATGAACATCACGCATTCGGAGCCGATTGAGCCGTTTGCCGGCCGCTACGGCAAGCGCCGCGCCGACATC GCACCGCTGCTCGACGCGTTCGGGCCGGATGCGCTGCGCGGCTGGCTCGACGATCTGGGCGTCGCGACGTTCGTCGGCAG TTCGGGCCGCGTGTTTCCCGTCGACATGAAGGCCGCGCCGATGTTGCGCGCGTGGCTACATCGGCTTCGCGGAGCGGGCG TGCAGTTCCATATGCGGCACAAGTGGAACGGCTGGCGCGCGTCGGAATCATCGAGCGCGCACGGATTAGGTTTCACGACG CCGCAGGGCGAACGCGAAGTGACGGCAGACGCCGTCGTGTTTGCGCTGGGCGGGGGAAGTTGGGCGCGCCTTGGCTCCGA TGCCGCGTGGGTTCCCTTGATGCAGCAACGCCATATTCCCGTCGCACCGCTCCTCCCGAGCAACTGCGGCTTCGACGCCG ACTGGACCGATTACTTCCGCGATCGTTACGCGGGTCAGCCGGTGAAGCCAGTTTCGATAACCGTCGAAGGCGTGGACGGC ACGATCCAGCATCGGCAAGGCGAGTTCGTCGTGACGTCGACGGGAATCGAGGGAAGCCTCGTGTATGCATTGTCCGCGAC GATCCGCGATCGCCTCCTGGCCGACGGCGAAGCGACCATACGGCTCGATCTTGCGCCGGGTCTGAGCGCGCAACGCGTGA TCGACGAGGTGACGCGACCGCGCGGATCACGCTCGATGTCGAGCCATCTCCATAGCCGCATCGGCATCACGGGGGTCAAG CTGGGTTTGCTGCACGAGTGCGTGTCGAAGGACGATTTCACCGATGCCGCGAAGCTCGCGCAAGCGATCAAGTCCCTGCC GTTGCGGCTGGCGCGTACGCGCGCCATCGATGAAGCGATCAGCAGCGCGGGCGGCATCCCGTTCGAAGCGCTCGATCGCG CGTTGATGATCCGCCATCTGCCGGGCGTGTTTTGCGCGGGGGAGATGCTCGATTGGGAAGCCCCGACGGGTGGCTATCTG CTGACCGCATGCTTCGCGAGCGGCCTCGTAGCGGGCAATGGCGCGTTGGCGTATCTTCAGACCCCCTGA
Upstream 100 bases:
>100_bases AATCGCGGCGCGACCCGTTTGCCCCGCCTTCTGCCCGGTGGGACAATACCGGCCTTCGTGCACAACGCGCTTTCCGCCCT TCACCCTCCAGTCTTCATCG
Downstream 100 bases:
>100_bases CCCGCAGCCTCGCGCGTCATCTGGCCTTGAGCCGCCACAGCGAAGTCACTTCGGCCATGCGCGCCGCATGCAGCGGGTCT GAAGCATCGGTTGCTTTCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MSKSPEITADHVRVAVVGGGPAGLMAAEALARGGVRVDVYDAMPSVGRKFLMAGKGGMNITHSEPIEPFAGRYGKRRADI APLLDAFGPDALRGWLDDLGVATFVGSSGRVFPVDMKAAPMLRAWLHRLRGAGVQFHMRHKWNGWRASESSSAHGLGFTT PQGEREVTADAVVFALGGGSWARLGSDAAWVPLMQQRHIPVAPLLPSNCGFDADWTDYFRDRYAGQPVKPVSITVEGVDG TIQHRQGEFVVTSTGIEGSLVYALSATIRDRLLADGEATIRLDLAPGLSAQRVIDEVTRPRGSRSMSSHLHSRIGITGVK LGLLHECVSKDDFTDAAKLAQAIKSLPLRLARTRAIDEAISSAGGIPFEALDRALMIRHLPGVFCAGEMLDWEAPTGGYL LTACFASGLVAGNGALAYLQTP
Sequences:
>Translated_422_residues MSKSPEITADHVRVAVVGGGPAGLMAAEALARGGVRVDVYDAMPSVGRKFLMAGKGGMNITHSEPIEPFAGRYGKRRADI APLLDAFGPDALRGWLDDLGVATFVGSSGRVFPVDMKAAPMLRAWLHRLRGAGVQFHMRHKWNGWRASESSSAHGLGFTT PQGEREVTADAVVFALGGGSWARLGSDAAWVPLMQQRHIPVAPLLPSNCGFDADWTDYFRDRYAGQPVKPVSITVEGVDG TIQHRQGEFVVTSTGIEGSLVYALSATIRDRLLADGEATIRLDLAPGLSAQRVIDEVTRPRGSRSMSSHLHSRIGITGVK LGLLHECVSKDDFTDAAKLAQAIKSLPLRLARTRAIDEAISSAGGIPFEALDRALMIRHLPGVFCAGEMLDWEAPTGGYL LTACFASGLVAGNGALAYLQTP >Mature_421_residues SKSPEITADHVRVAVVGGGPAGLMAAEALARGGVRVDVYDAMPSVGRKFLMAGKGGMNITHSEPIEPFAGRYGKRRADIA PLLDAFGPDALRGWLDDLGVATFVGSSGRVFPVDMKAAPMLRAWLHRLRGAGVQFHMRHKWNGWRASESSSAHGLGFTTP QGEREVTADAVVFALGGGSWARLGSDAAWVPLMQQRHIPVAPLLPSNCGFDADWTDYFRDRYAGQPVKPVSITVEGVDGT IQHRQGEFVVTSTGIEGSLVYALSATIRDRLLADGEATIRLDLAPGLSAQRVIDEVTRPRGSRSMSSHLHSRIGITGVKL GLLHECVSKDDFTDAAKLAQAIKSLPLRLARTRAIDEAISSAGGIPFEALDRALMIRHLPGVFCAGEMLDWEAPTGGYLL TACFASGLVAGNGALAYLQTP
Specific function: Unknown
COG id: COG2081
COG function: function code R; Predicted flavoproteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004792 - InterPro: IPR013027 [H]
Pfam domain/function: PF03486 HI0933_like [H]
EC number: NA
Molecular weight: Translated: 44986; Mature: 44855
Theoretical pI: Translated: 8.05; Mature: 8.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKSPEITADHVRVAVVGGGPAGLMAAEALARGGVRVDVYDAMPSVGRKFLMAGKGGMNI CCCCCCCEECCEEEEEECCCCHHHHHHHHHHHCCCEEEEHHHCHHHCHHEEEECCCCCCC THSEPIEPFAGRYGKRRADIAPLLDAFGPDALRGWLDDLGVATFVGSSGRVFPVDMKAAP CCCCCCCHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHEEECCCCCEEEECCCHHH MLRAWLHRLRGAGVQFHMRHKWNGWRASESSSAHGLGFTTPQGEREVTADAVVFALGGGS HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEECCCC WARLGSDAAWVPLMQQRHIPVAPLLPSNCGFDADWTDYFRDRYAGQPVKPVSITVEGVDG HHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCC TIQHRQGEFVVTSTGIEGSLVYALSATIRDRLLADGEATIRLDLAPGLSAQRVIDEVTRP EEEECCCCEEEEECCCCCEEEEEHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCC RGSRSMSSHLHSRIGITGVKLGLLHECVSKDDFTDAAKLAQAIKSLPLRLARTRAIDEAI CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SSAGGIPFEALDRALMIRHLPGVFCAGEMLDWEAPTGGYLLTACFASGLVAGNGALAYLQ HHCCCCCHHHHHHHHHHHHCCCCEECCCEECCCCCCCCHHHHHHHHCCEEECCCEEEEEE TP CC >Mature Secondary Structure SKSPEITADHVRVAVVGGGPAGLMAAEALARGGVRVDVYDAMPSVGRKFLMAGKGGMNI CCCCCCEECCEEEEEECCCCHHHHHHHHHHHCCCEEEEHHHCHHHCHHEEEECCCCCCC THSEPIEPFAGRYGKRRADIAPLLDAFGPDALRGWLDDLGVATFVGSSGRVFPVDMKAAP CCCCCCCHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHCCHHEEECCCCCEEEECCCHHH MLRAWLHRLRGAGVQFHMRHKWNGWRASESSSAHGLGFTTPQGEREVTADAVVFALGGGS HHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEECCEEEEEECCCC WARLGSDAAWVPLMQQRHIPVAPLLPSNCGFDADWTDYFRDRYAGQPVKPVSITVEGVDG HHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCC TIQHRQGEFVVTSTGIEGSLVYALSATIRDRLLADGEATIRLDLAPGLSAQRVIDEVTRP EEEECCCCEEEEECCCCCEEEEEHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCC RGSRSMSSHLHSRIGITGVKLGLLHECVSKDDFTDAAKLAQAIKSLPLRLARTRAIDEAI CCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH SSAGGIPFEALDRALMIRHLPGVFCAGEMLDWEAPTGGYLLTACFASGLVAGNGALAYLQ HHCCCCCHHHHHHHHHHHHCCCCEECCCEECCCCCCCCHHHHHHHHCCEEECCCEEEEEE TP CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]