| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is gspO [H]
Identifier: 186477405
GI number: 186477405
Start: 2998222
End: 2999151
Strand: Direct
Name: gspO [H]
Synonym: Bphy_2657
Alternate gene names: 186477405
Gene position: 2998222-2999151 (Clockwise)
Preceding gene: 186477404
Following gene: 186477406
Centisome position: 86.18
GC content: 63.76
Gene sequence:
>930_bases ATGCCGATCCCGCTCACGTCCGTACCCGAACCCTCCCTTAGCGGCCCGCTCGCCCGTTTCGCGGACAACCTCAGCGCGGC CTTCGACATGTTGCCGGCCGCTGCGCAGATCGCGTTCGTGATCGTCTTCGGCCTCGTGATTGGCAGCTTTCTGAACGTCG TCGTGCATCGGCTGCCGATCATGCTCGAACGCGCATGGCGCTCGGAAGTCAACGAAGCAACGGGCCACGCATTCGACGAA GACGGCCTGCCCGAACGCTACAACCTGTGGTTGCCGCGCAGCGCATGTCCTCATTGTGCTCATGTGCTGCGCACGTGGGA GAACATTCCCGTGTTCAGCTATCTGCTGTTGCGCGGTCGCTGCTCGCAATGCAAGGGGCGCGTGAGCTTTCGGTATCCGC TGCTCGAACTGTCGAGCGCGGCGCTGGCGCTGGGTGCGCTCGTCGCGTTCGGTGCAACGGGCTCGGCGCTCGCTGCGTTC GGCCTGTGTGCGACGCTGCTGGCGATGAGCGCGATCGATATCGACACGCACCTGTTGCCCGATTCGATGACCTTGCCGTT GCTGTGGGCCGGCCTCATCGTCAATTTCAATGCGGTGTTCGCGACCCTGCACGATGCCGTAGTCGGCGCGATCGCCGGTT ACCTCGCATTGTGGTGCGTGCATTGGCTGTTCAAGATCGTGCGCGGTGTCGAAGGGATGGGATACGGCGATTTCAAGCTG CTCTCCGCACTGGGTGCGTGGCTTGGCTGGACTGCGCTGCCGCAGATCATTCTGATCGCGGCGGTGACAGGTGCCGTCGT GGGCCTGTTTGCAACGTGGATCGGCCGCATGCGGTTCGAAGAGCCGCTGCCATTCGGTCCGTTTCTCGCGGCGGGCGGCG CGGTGACGCTCTTTGTCGGCACGCCGCTTTACATGGCTTTGGGAGGCTGA
Upstream 100 bases:
>100_bases GGCGTGCTCGTCGGCGGTCTTGTCGTCGCGATGTATCTTCCCATTATCCAACTCGGCAACGTGGTGTAGTAGCATCGCAG CCGAATCCCGACAATCGATC
Downstream 100 bases:
>100_bases CGCATGTTTGCTGTGGGATTGACGGGCGGCATCGGCAGCGGCAAATCTACGGTAGGCGATCTGTTCGCGAAACGTGGCGT GACACTCGTCGATACCGACG
Product: prepilin peptidase
Products: NA
Alternate protein names: Leader peptidase; Prepilin peptidase; N-methyltransferase [H]
Number of amino acids: Translated: 309; Mature: 308
Protein sequence:
>309_residues MPIPLTSVPEPSLSGPLARFADNLSAAFDMLPAAAQIAFVIVFGLVIGSFLNVVVHRLPIMLERAWRSEVNEATGHAFDE DGLPERYNLWLPRSACPHCAHVLRTWENIPVFSYLLLRGRCSQCKGRVSFRYPLLELSSAALALGALVAFGATGSALAAF GLCATLLAMSAIDIDTHLLPDSMTLPLLWAGLIVNFNAVFATLHDAVVGAIAGYLALWCVHWLFKIVRGVEGMGYGDFKL LSALGAWLGWTALPQIILIAAVTGAVVGLFATWIGRMRFEEPLPFGPFLAAGGAVTLFVGTPLYMALGG
Sequences:
>Translated_309_residues MPIPLTSVPEPSLSGPLARFADNLSAAFDMLPAAAQIAFVIVFGLVIGSFLNVVVHRLPIMLERAWRSEVNEATGHAFDE DGLPERYNLWLPRSACPHCAHVLRTWENIPVFSYLLLRGRCSQCKGRVSFRYPLLELSSAALALGALVAFGATGSALAAF GLCATLLAMSAIDIDTHLLPDSMTLPLLWAGLIVNFNAVFATLHDAVVGAIAGYLALWCVHWLFKIVRGVEGMGYGDFKL LSALGAWLGWTALPQIILIAAVTGAVVGLFATWIGRMRFEEPLPFGPFLAAGGAVTLFVGTPLYMALGG >Mature_308_residues PIPLTSVPEPSLSGPLARFADNLSAAFDMLPAAAQIAFVIVFGLVIGSFLNVVVHRLPIMLERAWRSEVNEATGHAFDED GLPERYNLWLPRSACPHCAHVLRTWENIPVFSYLLLRGRCSQCKGRVSFRYPLLELSSAALALGALVAFGATGSALAAFG LCATLLAMSAIDIDTHLLPDSMTLPLLWAGLIVNFNAVFATLHDAVVGAIAGYLALWCVHWLFKIVRGVEGMGYGDFKLL SALGAWLGWTALPQIILIAAVTGAVVGLFATWIGRMRFEEPLPFGPFLAAGGAVTLFVGTPLYMALGG
Specific function: Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue [H]
COG id: COG1989
COG function: function code NOU; Type II secretory pathway, prepilin signal peptidase PulO and related peptidases
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase A24 family [H]
Homologues:
Organism=Escherichia coli, GI87082194, Length=273, Percent_Identity=40.2930402930403, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI1789732, Length=132, Percent_Identity=50, Blast_Score=102, Evalue=3e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010627 - InterPro: IPR014032 - InterPro: IPR000045 [H]
Pfam domain/function: PF06750 DiS_P_DiS; PF01478 Peptidase_A24 [H]
EC number: =3.4.23.43 [H]
Molecular weight: Translated: 33080; Mature: 32949
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIPLTSVPEPSLSGPLARFADNLSAAFDMLPAAAQIAFVIVFGLVIGSFLNVVVHRLPI CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLERAWRSEVNEATGHAFDEDGLPERYNLWLPRSACPHCAHVLRTWENIPVFSYLLLRGR HHHHHHHHHHHHHHCCCCCCCCCCCHHCEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCC CSQCKGRVSFRYPLLELSSAALALGALVAFGATGSALAAFGLCATLLAMSAIDIDTHLLP HHHHCCCCEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHCCC DSMTLPLLWAGLIVNFNAVFATLHDAVVGAIAGYLALWCVHWLFKIVRGVEGMGYGDFKL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LSALGAWLGWTALPQIILIAAVTGAVVGLFATWIGRMRFEEPLPFGPFLAAGGAVTLFVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCEEEEEEC TPLYMALGG CCHHHHCCC >Mature Secondary Structure PIPLTSVPEPSLSGPLARFADNLSAAFDMLPAAAQIAFVIVFGLVIGSFLNVVVHRLPI CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MLERAWRSEVNEATGHAFDEDGLPERYNLWLPRSACPHCAHVLRTWENIPVFSYLLLRGR HHHHHHHHHHHHHHCCCCCCCCCCCHHCEECCCCCCHHHHHHHHHHCCCHHHHHHHHHCC CSQCKGRVSFRYPLLELSSAALALGALVAFGATGSALAAFGLCATLLAMSAIDIDTHLLP HHHHCCCCEEECHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHHCCC DSMTLPLLWAGLIVNFNAVFATLHDAVVGAIAGYLALWCVHWLFKIVRGVEGMGYGDFKL CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH LSALGAWLGWTALPQIILIAAVTGAVVGLFATWIGRMRFEEPLPFGPFLAAGGAVTLFVG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCEEEEEEC TPLYMALGG CCHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 10419967 [H]