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The map label for this gene is ygaD [H]

Identifier: 186477355

GI number: 186477355

Start: 2946320

End: 2946820

Strand: Direct

Name: ygaD [H]

Synonym: Bphy_2607

Alternate gene names: 186477355

Gene position: 2946320-2946820 (Clockwise)

Preceding gene: 186477354

Following gene: 186477356

Centisome position: 84.68

GC content: 66.47

Gene sequence:

>501_bases
ATGGCTACCGATTCCGTCGTCCACCAACTCGCCATTCGCGTCGGCAATCGTCTGCGGGACGAGCGGCTGATGCTCGCCAC
GGCTGAATCCTGTACGGGCGGCATGGTCGCGACGGCGATCACCGACATTTCGGGCAGCAGCGGATGGTTCGAGCGCGGCT
TCGTCACCTACTCGAATCAGGCGAAGATCGAGATGATCGGCGTCCCGTCCGATCTGATCGACAGGCACGGCGCCGTGTCC
GAACCTGTCGCGCGGGCGATGGTCGAAGGGGCGCTGCGCAATTCCCGCGCTCAGGTCGCGCTGTCGATCACGGGCGTCGC
CGGTCCGGGCGGCGGCACGGAGACGAAACCCGTCGGCATGGTGTGTTTCGGATGGAGCAACCGCCTGCATACGGTCGTCG
AAACGCTCGTGTTCAAGGGCGACCGCGAGCGGGTGCGCGTGCAGGCGGCGACACATGCATTGCGCGGGCTGCTGACCCTG
CTCGACGAACGCGAGCGCTGA

Upstream 100 bases:

>100_bases
TGACATCGTCGCGGCGTTTTTCACGTTGCTCGTGATTGCGCTCTGGCGGATGTCGCTCTGATCATTCGCAGCGTCTTTCT
TACCCGAGTCCAAGTCCAGC

Downstream 100 bases:

>100_bases
CTTCTTCCGCCGTGGACGGCGGCAGCCGTTCTCGATGACAGCAGGAAATCATGTCTCGACATATCGACCGCGATGAACTG
ATCCGCCGCTTCGACCTTCA

Product: CinA domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 166; Mature: 165

Protein sequence:

>166_residues
MATDSVVHQLAIRVGNRLRDERLMLATAESCTGGMVATAITDISGSSGWFERGFVTYSNQAKIEMIGVPSDLIDRHGAVS
EPVARAMVEGALRNSRAQVALSITGVAGPGGGTETKPVGMVCFGWSNRLHTVVETLVFKGDRERVRVQAATHALRGLLTL
LDERER

Sequences:

>Translated_166_residues
MATDSVVHQLAIRVGNRLRDERLMLATAESCTGGMVATAITDISGSSGWFERGFVTYSNQAKIEMIGVPSDLIDRHGAVS
EPVARAMVEGALRNSRAQVALSITGVAGPGGGTETKPVGMVCFGWSNRLHTVVETLVFKGDRERVRVQAATHALRGLLTL
LDERER
>Mature_165_residues
ATDSVVHQLAIRVGNRLRDERLMLATAESCTGGMVATAITDISGSSGWFERGFVTYSNQAKIEMIGVPSDLIDRHGAVSE
PVARAMVEGALRNSRAQVALSITGVAGPGGGTETKPVGMVCFGWSNRLHTVVETLVFKGDRERVRVQAATHALRGLLTLL
DERER

Specific function: Unknown

COG id: COG1546

COG function: function code R; Uncharacterized protein (competence- and mitomycin-induced)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CinA family [H]

Homologues:

Organism=Escherichia coli, GI1789052, Length=156, Percent_Identity=53.8461538461538, Blast_Score=160, Evalue=5e-41,
Organism=Escherichia coli, GI1787818, Length=139, Percent_Identity=37.410071942446, Blast_Score=102, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008136 [H]

Pfam domain/function: PF02464 CinA [H]

EC number: NA

Molecular weight: Translated: 17820; Mature: 17688

Theoretical pI: Translated: 8.26; Mature: 8.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATDSVVHQLAIRVGNRLRDERLMLATAESCTGGMVATAITDISGSSGWFERGFVTYSNQ
CCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHEECCCCCCCCCCCCEEEECCC
AKIEMIGVPSDLIDRHGAVSEPVARAMVEGALRNSRAQVALSITGVAGPGGGTETKPVGM
CEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEE
VCFGWSNRLHTVVETLVFKGDRERVRVQAATHALRGLLTLLDERER
EEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ATDSVVHQLAIRVGNRLRDERLMLATAESCTGGMVATAITDISGSSGWFERGFVTYSNQ
CCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEHHEECCCCCCCCCCCCEEEECCC
AKIEMIGVPSDLIDRHGAVSEPVARAMVEGALRNSRAQVALSITGVAGPGGGTETKPVGM
CEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCEE
VCFGWSNRLHTVVETLVFKGDRERVRVQAATHALRGLLTLLDERER
EEECCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]