| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is tkt1 [H]
Identifier: 186477347
GI number: 186477347
Start: 2936824
End: 2938842
Strand: Reverse
Name: tkt1 [H]
Synonym: Bphy_2599
Alternate gene names: 186477347
Gene position: 2938842-2936824 (Counterclockwise)
Preceding gene: 186477350
Following gene: 186477346
Centisome position: 84.47
GC content: 64.04
Gene sequence:
>2019_bases ATGACGACCCCGTCTCCCGCCCCTACCTCCCTGATGGCCAACGCGATTCGCGCGCTGTCCATGGATGCTGTTCAAGCAGC GAACTCCGGTCACCCCGGCATGCCGATGGGCATGGCCGAGATCGGCGTGGCGCTCTGGTCGCGGCACCTGCGTCACAACC CTAGGAACCCGCGTTGGGCCGATCGCGACCGCTTCGTGCTGTCAAACGGTCACGGCTCGATGCTGCTGTATTCGCTGCTC CATCTGACGGGCTACGACCTGCCGATGGAGGAGCTGAAGAACTTCCGCCAGCTGCACTCGAAAACGCCGGGCCATCCGGA ATACGGCATCACCCCGGGCGTCGAGACGACCACGGGCCCGCTCGGCCAGGGTCTCGCGAACGCAGTCGGCATGGCGCTCG CGGAATCGCTGCTTGCGAACGAATTCAACAAGGCCGACGCGAAGATCGTCGATCACCACACGTACGTGTTCGTCGGCGAC GGCTGCCTGATGGAAGGCATTTCGCACGAAGCCTGCTCGCTGGCTGGCGTGCTGAAGCTGAACAAGCTGATCGCGTTCTA CGACGACAACGGTATCTCCATCGACGGCGACGTCGTTCACTGGTTCCACGACGACACGCCGAAGCGCTTTGAAGCGTATG GCTGGAACGTGATTCCGGGCGTGATCGGCCATGACGTCGAAGCCGTCGACGCAGCCATCAAGAAGGCGAAGCAGTCTGAC AAGCCGACGCTGATCTGCTGTAAGACCGTGATCGGCGAAGGTTCGCCGAACAAGGCCGGCTCGCACGACGTGCACGGCGC TGCGCTGGGCGACAAGGAAGTCGCGGCCACGCGCGAGAAGCTCGGCTGGAACTACCCGCCGTTCGTGATCCCGCAGGAAG TCTACGCAGCGTGGGACGCGAAGGAGAAGGGCGCGAAGATCGAAGGCGAATGGAACGACGCGTTCGCGGCTTATCGTGCG AAGTATTCGCAGGAAGCCGCCGACTTCGAGCGCCGCATGGCGAACAAGCTTCCCGCCGACTGGGCGGAAAAGGCGCAGGC GATTATCGCCGGCGCGAACGAGCGCGCTGAAACCATCGCGACCCGCAAGGCGTCGCAGCAGGCCATCGAAGGCCTCTCCG CCGTGCTGCCGGAACTGGTCGGCGGTTCGGCCGACCTGACGGGCTCGAACCTCACGAACTGGAAGGCGGCAAAGTACGTG CGCGTCGGCGAAAACGGCGCGGCGGGCAATTACGTCAACTACGGCGTGCGCGAATTCGGCATGAGCGCGGCCATTAACGG CCTCGCGGTGCATGGCGGCCATAAGGCGTTCGGCGGCACGTTCCTGACGTTCTCGGACTACAGCCGCAATGCGCTGCGCG TCGCCGCGCTGATGAAGTCGCCGTCCATTTTCGTGTTCACGCACGACTCGATCGGCCTCGGCGAAGACGGTCCGACGCAC CAGTCGATCGAACATGTCGCGAGCCTGCGCCTGATTCCGCACATGCAGGTGTGGCGTCCGGCGGATACCGTCGAAACGGC TGTCGCGTGGACGCAGGCTGTCGAACATCAGGGCCCGTCGTGCCTGATCTTCAGCCGTCAGAACCTCGCGTTCAACCCGC GCACCGACGCGCAGATCGCCAACATCGCGAAGGGCGGCTACGTGCTGAAGGACTGGAACGACGACATTCCTGCGCGCAAG ATCATCCTGATTGCGACGGGGTCGGAAGTGGAACTGGCGATGAAGTCGGTCGAAGCGCTCGCACGCGAAGGCATTGCGGC GCGCGTCGTATCGATGCCGTCCACGACTACCTTCGACAAGCAGGATGCCGAGTACCGTGAGCGTGTGCTGCCGCATGGCG TGCGCCGCGTCGCGATCGAAGCGGGCGTCACGGATTTCTGGCGCAAGTACGTGGGCCTGGAAGGCGGCGTCGTCGGTATC GACGTGTTCGGCGAATCGGCTCCCGCAGGCGCGCTCTTCAAGTATTTCGGTTTCACCGTCGAGAAGGTTGTCGAGACGGC CAAGGCCGCACTCGGCTAA
Upstream 100 bases:
>100_bases TCGCGTCTCCCGGCGCCGCACCGTGCGCCGAAGCAGATTGGCCGCAGGCTTCCGGACCACCATCGGCGCCCCGCTTTTTG GACCATTCTCCGGAATCGAC
Downstream 100 bases:
>100_bases GGCGCGCAGCGCGTCGTGCGCGCCGCGTTTCGGGCGGCGCGCATGAATGCTACGAGGCGCACTAGCCGCGCATCACGGAA GAATTTTTTCAGCCATCAGG
Product: transketolase
Products: NA
Alternate protein names: TK 1 [H]
Number of amino acids: Translated: 672; Mature: 671
Protein sequence:
>672_residues MTTPSPAPTSLMANAIRALSMDAVQAANSGHPGMPMGMAEIGVALWSRHLRHNPRNPRWADRDRFVLSNGHGSMLLYSLL HLTGYDLPMEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALAESLLANEFNKADAKIVDHHTYVFVGD GCLMEGISHEACSLAGVLKLNKLIAFYDDNGISIDGDVVHWFHDDTPKRFEAYGWNVIPGVIGHDVEAVDAAIKKAKQSD KPTLICCKTVIGEGSPNKAGSHDVHGAALGDKEVAATREKLGWNYPPFVIPQEVYAAWDAKEKGAKIEGEWNDAFAAYRA KYSQEAADFERRMANKLPADWAEKAQAIIAGANERAETIATRKASQQAIEGLSAVLPELVGGSADLTGSNLTNWKAAKYV RVGENGAAGNYVNYGVREFGMSAAINGLAVHGGHKAFGGTFLTFSDYSRNALRVAALMKSPSIFVFTHDSIGLGEDGPTH QSIEHVASLRLIPHMQVWRPADTVETAVAWTQAVEHQGPSCLIFSRQNLAFNPRTDAQIANIAKGGYVLKDWNDDIPARK IILIATGSEVELAMKSVEALAREGIAARVVSMPSTTTFDKQDAEYRERVLPHGVRRVAIEAGVTDFWRKYVGLEGGVVGI DVFGESAPAGALFKYFGFTVEKVVETAKAALG
Sequences:
>Translated_672_residues MTTPSPAPTSLMANAIRALSMDAVQAANSGHPGMPMGMAEIGVALWSRHLRHNPRNPRWADRDRFVLSNGHGSMLLYSLL HLTGYDLPMEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALAESLLANEFNKADAKIVDHHTYVFVGD GCLMEGISHEACSLAGVLKLNKLIAFYDDNGISIDGDVVHWFHDDTPKRFEAYGWNVIPGVIGHDVEAVDAAIKKAKQSD KPTLICCKTVIGEGSPNKAGSHDVHGAALGDKEVAATREKLGWNYPPFVIPQEVYAAWDAKEKGAKIEGEWNDAFAAYRA KYSQEAADFERRMANKLPADWAEKAQAIIAGANERAETIATRKASQQAIEGLSAVLPELVGGSADLTGSNLTNWKAAKYV RVGENGAAGNYVNYGVREFGMSAAINGLAVHGGHKAFGGTFLTFSDYSRNALRVAALMKSPSIFVFTHDSIGLGEDGPTH QSIEHVASLRLIPHMQVWRPADTVETAVAWTQAVEHQGPSCLIFSRQNLAFNPRTDAQIANIAKGGYVLKDWNDDIPARK IILIATGSEVELAMKSVEALAREGIAARVVSMPSTTTFDKQDAEYRERVLPHGVRRVAIEAGVTDFWRKYVGLEGGVVGI DVFGESAPAGALFKYFGFTVEKVVETAKAALG >Mature_671_residues TTPSPAPTSLMANAIRALSMDAVQAANSGHPGMPMGMAEIGVALWSRHLRHNPRNPRWADRDRFVLSNGHGSMLLYSLLH LTGYDLPMEELKNFRQLHSKTPGHPEYGITPGVETTTGPLGQGLANAVGMALAESLLANEFNKADAKIVDHHTYVFVGDG CLMEGISHEACSLAGVLKLNKLIAFYDDNGISIDGDVVHWFHDDTPKRFEAYGWNVIPGVIGHDVEAVDAAIKKAKQSDK PTLICCKTVIGEGSPNKAGSHDVHGAALGDKEVAATREKLGWNYPPFVIPQEVYAAWDAKEKGAKIEGEWNDAFAAYRAK YSQEAADFERRMANKLPADWAEKAQAIIAGANERAETIATRKASQQAIEGLSAVLPELVGGSADLTGSNLTNWKAAKYVR VGENGAAGNYVNYGVREFGMSAAINGLAVHGGHKAFGGTFLTFSDYSRNALRVAALMKSPSIFVFTHDSIGLGEDGPTHQ SIEHVASLRLIPHMQVWRPADTVETAVAWTQAVEHQGPSCLIFSRQNLAFNPRTDAQIANIAKGGYVLKDWNDDIPARKI ILIATGSEVELAMKSVEALAREGIAARVVSMPSTTTFDKQDAEYRERVLPHGVRRVAIEAGVTDFWRKYVGLEGGVVGID VFGESAPAGALFKYFGFTVEKVVETAKAALG
Specific function: Unknown
COG id: COG0021
COG function: function code G; Transketolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transketolase family [H]
Homologues:
Organism=Homo sapiens, GI205277463, Length=601, Percent_Identity=28.2861896838602, Blast_Score=177, Evalue=4e-44, Organism=Homo sapiens, GI4507521, Length=601, Percent_Identity=28.2861896838602, Blast_Score=177, Evalue=4e-44, Organism=Homo sapiens, GI133778974, Length=256, Percent_Identity=35.15625, Blast_Score=117, Evalue=3e-26, Organism=Escherichia coli, GI48994911, Length=663, Percent_Identity=64.5550527903469, Blast_Score=876, Evalue=0.0, Organism=Escherichia coli, GI1788808, Length=664, Percent_Identity=62.8012048192771, Blast_Score=837, Evalue=0.0, Organism=Caenorhabditis elegans, GI17539652, Length=675, Percent_Identity=25.9259259259259, Blast_Score=159, Evalue=4e-39, Organism=Saccharomyces cerevisiae, GI6325331, Length=672, Percent_Identity=49.2559523809524, Blast_Score=597, Evalue=1e-171, Organism=Saccharomyces cerevisiae, GI6319593, Length=677, Percent_Identity=45.1994091580502, Blast_Score=548, Evalue=1e-156, Organism=Drosophila melanogaster, GI45551847, Length=610, Percent_Identity=28.8524590163934, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI45550715, Length=610, Percent_Identity=28.8524590163934, Blast_Score=179, Evalue=5e-45, Organism=Drosophila melanogaster, GI24645119, Length=577, Percent_Identity=28.2495667244367, Blast_Score=157, Evalue=2e-38, Organism=Drosophila melanogaster, GI24666278, Length=270, Percent_Identity=34.0740740740741, Blast_Score=128, Evalue=1e-29,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009014 - InterPro: IPR015941 - InterPro: IPR005475 - InterPro: IPR005478 - InterPro: IPR020826 - InterPro: IPR005476 - InterPro: IPR005474 [H]
Pfam domain/function: PF02779 Transket_pyr; PF02780 Transketolase_C; PF00456 Transketolase_N [H]
EC number: =2.2.1.1 [H]
Molecular weight: Translated: 72510; Mature: 72379
Theoretical pI: Translated: 6.55; Mature: 6.55
Prosite motif: PS00801 TRANSKETOLASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTPSPAPTSLMANAIRALSMDAVQAANSGHPGMPMGMAEIGVALWSRHLRHNPRNPRWA CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC DRDRFVLSNGHGSMLLYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEYGITPGVETTTGP CCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC LGQGLANAVGMALAESLLANEFNKADAKIVDHHTYVFVGDGCLMEGISHEACSLAGVLKL HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEEECCCHHHHCCCHHHHHHHHHHHH NKLIAFYDDNGISIDGDVVHWFHDDTPKRFEAYGWNVIPGVIGHDVEAVDAAIKKAKQSD CCEEEEECCCCEEECCCEEEEECCCCCHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHCCC KPTLICCKTVIGEGSPNKAGSHDVHGAALGDKEVAATREKLGWNYPPFVIPQEVYAAWDA CCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCC KEKGAKIEGEWNDAFAAYRAKYSQEAADFERRMANKLPADWAEKAQAIIAGANERAETIA HHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEHCCCCHHHHHHH TRKASQQAIEGLSAVLPELVGGSADLTGSNLTNWKAAKYVRVGENGAAGNYVNYGVREFG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCHHHHH MSAAINGLAVHGGHKAFGGTFLTFSDYSRNALRVAALMKSPSIFVFTHDSIGLGEDGPTH HHHHCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCH QSIEHVASLRLIPHMQVWRPADTVETAVAWTQAVEHQGPSCLIFSRQNLAFNPRTDAQIA HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH NIAKGGYVLKDWNDDIPARKIILIATGSEVELAMKSVEALAREGIAARVVSMPSTTTFDK HHCCCCEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC QDAEYRERVLPHGVRRVAIEAGVTDFWRKYVGLEGGVVGIDVFGESAPAGALFKYFGFTV CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH EKVVETAKAALG HHHHHHHHHHCC >Mature Secondary Structure TTPSPAPTSLMANAIRALSMDAVQAANSGHPGMPMGMAEIGVALWSRHLRHNPRNPRWA CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC DRDRFVLSNGHGSMLLYSLLHLTGYDLPMEELKNFRQLHSKTPGHPEYGITPGVETTTGP CCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC LGQGLANAVGMALAESLLANEFNKADAKIVDHHTYVFVGDGCLMEGISHEACSLAGVLKL HHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECEEEEEECCCHHHHCCCHHHHHHHHHHHH NKLIAFYDDNGISIDGDVVHWFHDDTPKRFEAYGWNVIPGVIGHDVEAVDAAIKKAKQSD CCEEEEECCCCEEECCCEEEEECCCCCHHHHHCCCCCCCCHHCCCHHHHHHHHHHHHCCC KPTLICCKTVIGEGSPNKAGSHDVHGAALGDKEVAATREKLGWNYPPFVIPQEVYAAWDA CCEEEEEEHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCC KEKGAKIEGEWNDAFAAYRAKYSQEAADFERRMANKLPADWAEKAQAIIAGANERAETIA HHCCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHEEHCCCCHHHHHHH TRKASQQAIEGLSAVLPELVGGSADLTGSNLTNWKAAKYVRVGENGAAGNYVNYGVREFG HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHCCHHHHH MSAAINGLAVHGGHKAFGGTFLTFSDYSRNALRVAALMKSPSIFVFTHDSIGLGEDGPTH HHHHCCCEEEECCCCCCCCEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCCCCCCCH QSIEHVASLRLIPHMQVWRPADTVETAVAWTQAVEHQGPSCLIFSRQNLAFNPRTDAQIA HHHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHH NIAKGGYVLKDWNDDIPARKIILIATGSEVELAMKSVEALAREGIAARVVSMPSTTTFDK HHCCCCEEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC QDAEYRERVLPHGVRRVAIEAGVTDFWRKYVGLEGGVVGIDVFGESAPAGALFKYFGFTV CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHH EKVVETAKAALG HHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10952301 [H]