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The map label for this gene is exbD1 [H]

Identifier: 186477337

GI number: 186477337

Start: 2927733

End: 2928209

Strand: Reverse

Name: exbD1 [H]

Synonym: Bphy_2589

Alternate gene names: 186477337

Gene position: 2928209-2927733 (Counterclockwise)

Preceding gene: 186477338

Following gene: 186477336

Centisome position: 84.16

GC content: 66.46

Gene sequence:

>477_bases
ATGGCATTCGGCGGACTCGACAGGCACAAGACGGCGGCGCCGATGGCGGACATCAACATGACGCCGCTAATCGACGTGAT
GCTCGTGCTGCTCGTCATTTTCATCATCACAGCGCCGCTCTTTACGCACGCAATCCGCCTGGATCTGCCGCGCGTCGCGG
CTGCCGAGTCGCGCGAAACGCCGCAGACCATCACGCTGTCGATCGACGCGGCGGGCAAGCTGTACTGGAACGGCAAGCCC
GTCACGCTCGAGCAGATGCGCGCGCAATTCAACGACGCGGGCAAACAGAAGGAGCAGCCGGAAATCCACCTGCGCGCCGA
ACGCTCGACGCGCTACGAAGTGATCGCGCAGGTCATGGGCGCAGCGCAGCAGGCGGGACTGGAGCGCATCGGTTTCGTGA
CGGAGCCGCCGGCATCGGGCAGTGCGGCCGCCGCGGGAAATTCGCCTGCGCCCGCCGCCGGACCGGCGGCACAGTAA

Upstream 100 bases:

>100_bases
ATGCCCAAGGCAGCGCACGCTCGCCTGCGCGGACGCAGGCCTAACGCACACACGCAAGCACACACGCAAGCACACAACCG
GCGAGAGCGAGGCACGGCAC

Downstream 100 bases:

>100_bases
GCCGCGGCAAGCCGCACACGCGCGGTCCAACACCCCGCTTCGAGCCTCGATCGTGTCCAATCGGTGTGCAATTGCCGCGC
AAAGCGCAGCGCATCCACTC

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 157

Protein sequence:

>158_residues
MAFGGLDRHKTAAPMADINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPRVAAAESRETPQTITLSIDAAGKLYWNGKP
VTLEQMRAQFNDAGKQKEQPEIHLRAERSTRYEVIAQVMGAAQQAGLERIGFVTEPPASGSAAAAGNSPAPAAGPAAQ

Sequences:

>Translated_158_residues
MAFGGLDRHKTAAPMADINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPRVAAAESRETPQTITLSIDAAGKLYWNGKP
VTLEQMRAQFNDAGKQKEQPEIHLRAERSTRYEVIAQVMGAAQQAGLERIGFVTEPPASGSAAAAGNSPAPAAGPAAQ
>Mature_157_residues
AFGGLDRHKTAAPMADINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPRVAAAESRETPQTITLSIDAAGKLYWNGKPV
TLEQMRAQFNDAGKQKEQPEIHLRAERSTRYEVIAQVMGAAQQAGLERIGFVTEPPASGSAAAAGNSPAPAAGPAAQ

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=124, Percent_Identity=37.9032258064516, Blast_Score=90, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 16800; Mature: 16668

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLDRHKTAAPMADINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPRVAAAESRET
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCC
PQTITLSIDAAGKLYWNGKPVTLEQMRAQFNDAGKQKEQPEIHLRAERSTRYEVIAQVMG
CCEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH
AAQQAGLERIGFVTEPPASGSAAAAGNSPAPAAGPAAQ
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLDRHKTAAPMADINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPRVAAAESRET
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCC
PQTITLSIDAAGKLYWNGKPVTLEQMRAQFNDAGKQKEQPEIHLRAERSTRYEVIAQVMG
CCEEEEEEECCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH
AAQQAGLERIGFVTEPPASGSAAAAGNSPAPAAGPAAQ
HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]