| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is leuS
Identifier: 186477336
GI number: 186477336
Start: 2924891
End: 2927485
Strand: Reverse
Name: leuS
Synonym: Bphy_2588
Alternate gene names: 186477336
Gene position: 2927485-2924891 (Counterclockwise)
Preceding gene: 186477337
Following gene: 186477335
Centisome position: 84.14
GC content: 62.85
Gene sequence:
>2595_bases ATGCACGAAAAATACGTTCCCTCCGACGTCGAATCCGCCGCGCAAGGACAATGGCGCGCCACCGACGCGTACAAAACGAC GGAAACGGCCGACAAGCCCAAGTTCTATTGCGTTTCGATGCTGCCGTATCCGTCGGGCAAGCTGCACATGGGGCACGTAC GCAATTACACGATCAATGACGTGATGTACCGCTATCTGCGGATGAACGGCTACAACACGCTGATGCCGATGGGCTGGGAC GCGTTCGGCATGCCCGCCGAAAACGCCGCGATGGCCAACGGCGTGCCGCCCGCGAAGTGGACGTACGACAACATCGCGTA CATGAAGAAGCAGATGCAGTCGATGGGTCTCGCCATCGACTGGTCGCGCGAAGTCGCCACCTGCAGCCCGGACTACTACA AGTGGAACCAGTGGATCTTCCTGAAGATGCTGGAAAAGGGCATCGCGTACAAGAAGACGGGCACCGTGAACTGGGACCCC GTGGATCAGACCGTGCTCGCGAACGAGCAGGTGATCGACGGCCGCGGCTGGCGCTCGGGCGCGCTCGTCGAGAAGCGCGA AATCCCGATGTACTACATGCGCATCACGCAGTACGCAGATGAGCTGCTGAACGATCTCGACGGCCTCGGCTGGCCCGAGC GCGTAAAGGTGATGCAGCAGAACTGGATCGGCAAGAGCTTCGGCGTGAACTTCGGCTTCCCGTACGAACTGGACGGCGAG CAAAAGCTGCTGCGCGTGTTCACGACGCGCGCCGACACGATCATGGGCGTGACCTTCTGCGCGGTCGCCGCCGAGCACCC GCTCGCGACGCGCCTCGCGCAAGGGCGTCCCGACCTGCAGTCGTTCATCGACGAATGCAAGCACGGCGGCGTCGCCGAAG CCGACATGGCGACGATGGAAAAGAAGGGCATGGCCACAGGCTTTTTTGTCACGCATCCGCTGACACAGGAGAAGGTCGAG GTCTGGATCGGCAACTACGTGCTGATGAGCTACGGCGAAGGTGCCGTGATGGGCGTGCCCGCGCACGACGAGCGAGACTT CGCGTTCGTGAAGAAGTACGGCATTCCCGTGAAGCAGGTCGTTGCCGTTGAAGGCGAGACGTTCTCGACGGACGCCTGGC AGGAATCGTACGGCGACAAGGAAAACGGCGTCCTGATCAATAGCGGCAAGTACGACGGCCTCAAGTACGGCGAAGCCGTC GACGCGATCGCTGCCGATCTGAAAGCACTCGGCCTCGGCGAGAAGCAGGTCACGTGGCGTCTGCGCGACTGGGGCATCTC GCGCCAGCGCTACTGGGGCACGCCGATCCCGATTATCCACTGCCCGTCGTGTGGCGACGTGCCCGTGCCGGAAAAGGATC TGCCCGTCGTGCTGCCGGAAGACCTCGTACCGGACGGCACGGGCAATCCCCTCGCGAAGTCGGAAGCGTTTCTGAACTGC ACCTGCCCGACGTGCGGCGCAGCCGCGAAGCGTGAAACCGACACGATGGACACGTTCGTCGATTCGTCCTGGTACTTCTA TCGCTACGCGGCACCCGACGCGAAGACGATGGTCGACGCGCGCACCGATTACTGGATGCCGATGGATCAATACATCGGCG GCATCGAGCACGCCATTCTTCACCTGCTTTACTCGCGTTTCTGGGCAAAGGTCTGCCGCGATCTGGGCATCGTGAAATTC GGCGAGCCGGCCAAGAACCTGCTCACGCAGGGCATGGTGCTCAACGAAACCTATTACCGCGAAAACGACGCGGGCAAGAA GACCTGGTACAACCCGGCCGACGTCACCGTCACGCACGACGACAAAGGCCGCCCGGTCGGCGCGACGCTGAACGCCGACG GGCAGCCCGTCGTGCTCGGCGGCGTCGAGAAGATGTCGAAGTCGAAGAACAACGGCGTCGACCCGCAGGTGCTCATCGAC CAGTACGGCGCCGATACCGCGCGTCTGTTCACGATGTTCGCCGCTCCGCCGGAACAGCAACTCGAGTGGTCGGGCGCGGG CGTCGAAGGCGCGAGCCGCTTCCTGCGCCGCGTGTGGGCGTTCGGTCAGGCAAACGAAACTGCGCTCACCGAGCGCGCTC CATTCGACGCCGCGAAGCTCGCCGACACCGAGAAAACGCTGCGCCGCGAAATCTACAGTGTGCTGAAGCAGGCCGACTTC GACTATCAGCGTTTGCAGTACAACACGGTCGTGTCGGCGGCGATGAAGATGCTCAACGCGATAGAAGGCGCAAAGGGCGC GAGCGCCGCCGTGCTGCGCGAAACGTACGGCGTGCTGCTGCGGGTGCTGTACCCGGTCGTGCCGCATGTCACGTTCCAGC TGTGGCGTGAGCTCGGCTACGAAGGCGAATTCGGTTCGCTGCTCGACGCACCGTGGCCGAAGGTCGACGAAAAAGCGCTG GAGCAAAGCGAAATCGAACTTGTGCTGCAGGTGAACGGCAAGGTGCGCGGCGCCGTGACGGTTGCGAAGGACGCGTCGCG CGAAGCGATCGAAGCCGTCGCGCTCGCCCACGAGATGTTCGCGAAGTTCAGCGAAGGCAAGCCAGCGAAGAAGGTCATCG TCGTGCCGGGCCGTCTCGTGAACGTCGTTGTCTGA
Upstream 100 bases:
>100_bases CCCTTGACGAAAAGGGGATCGACAAGACTTTCATCACGCAGAGCACCGTGCCGGTGCCGACGCACTGAACAGCGGCACCG AATAGCGATCCCATCACACC
Downstream 100 bases:
>100_bases CGGCTGCGCCAATCGCCTTAACTGCGAACCAGGAGCTCATGTGACTCGCAGATCGTTTTTGACTCTGGCGTGCAGCGCGG CGCTGCTGTCCGCGTGCGGC
Product: leucyl-tRNA synthetase
Products: NA
Alternate protein names: Leucine--tRNA ligase; LeuRS
Number of amino acids: Translated: 864; Mature: 864
Protein sequence:
>864_residues MHEKYVPSDVESAAQGQWRATDAYKTTETADKPKFYCVSMLPYPSGKLHMGHVRNYTINDVMYRYLRMNGYNTLMPMGWD AFGMPAENAAMANGVPPAKWTYDNIAYMKKQMQSMGLAIDWSREVATCSPDYYKWNQWIFLKMLEKGIAYKKTGTVNWDP VDQTVLANEQVIDGRGWRSGALVEKREIPMYYMRITQYADELLNDLDGLGWPERVKVMQQNWIGKSFGVNFGFPYELDGE QKLLRVFTTRADTIMGVTFCAVAAEHPLATRLAQGRPDLQSFIDECKHGGVAEADMATMEKKGMATGFFVTHPLTQEKVE VWIGNYVLMSYGEGAVMGVPAHDERDFAFVKKYGIPVKQVVAVEGETFSTDAWQESYGDKENGVLINSGKYDGLKYGEAV DAIAADLKALGLGEKQVTWRLRDWGISRQRYWGTPIPIIHCPSCGDVPVPEKDLPVVLPEDLVPDGTGNPLAKSEAFLNC TCPTCGAAAKRETDTMDTFVDSSWYFYRYAAPDAKTMVDARTDYWMPMDQYIGGIEHAILHLLYSRFWAKVCRDLGIVKF GEPAKNLLTQGMVLNETYYRENDAGKKTWYNPADVTVTHDDKGRPVGATLNADGQPVVLGGVEKMSKSKNNGVDPQVLID QYGADTARLFTMFAAPPEQQLEWSGAGVEGASRFLRRVWAFGQANETALTERAPFDAAKLADTEKTLRREIYSVLKQADF DYQRLQYNTVVSAAMKMLNAIEGAKGASAAVLRETYGVLLRVLYPVVPHVTFQLWRELGYEGEFGSLLDAPWPKVDEKAL EQSEIELVLQVNGKVRGAVTVAKDASREAIEAVALAHEMFAKFSEGKPAKKVIVVPGRLVNVVV
Sequences:
>Translated_864_residues MHEKYVPSDVESAAQGQWRATDAYKTTETADKPKFYCVSMLPYPSGKLHMGHVRNYTINDVMYRYLRMNGYNTLMPMGWD AFGMPAENAAMANGVPPAKWTYDNIAYMKKQMQSMGLAIDWSREVATCSPDYYKWNQWIFLKMLEKGIAYKKTGTVNWDP VDQTVLANEQVIDGRGWRSGALVEKREIPMYYMRITQYADELLNDLDGLGWPERVKVMQQNWIGKSFGVNFGFPYELDGE QKLLRVFTTRADTIMGVTFCAVAAEHPLATRLAQGRPDLQSFIDECKHGGVAEADMATMEKKGMATGFFVTHPLTQEKVE VWIGNYVLMSYGEGAVMGVPAHDERDFAFVKKYGIPVKQVVAVEGETFSTDAWQESYGDKENGVLINSGKYDGLKYGEAV DAIAADLKALGLGEKQVTWRLRDWGISRQRYWGTPIPIIHCPSCGDVPVPEKDLPVVLPEDLVPDGTGNPLAKSEAFLNC TCPTCGAAAKRETDTMDTFVDSSWYFYRYAAPDAKTMVDARTDYWMPMDQYIGGIEHAILHLLYSRFWAKVCRDLGIVKF GEPAKNLLTQGMVLNETYYRENDAGKKTWYNPADVTVTHDDKGRPVGATLNADGQPVVLGGVEKMSKSKNNGVDPQVLID QYGADTARLFTMFAAPPEQQLEWSGAGVEGASRFLRRVWAFGQANETALTERAPFDAAKLADTEKTLRREIYSVLKQADF DYQRLQYNTVVSAAMKMLNAIEGAKGASAAVLRETYGVLLRVLYPVVPHVTFQLWRELGYEGEFGSLLDAPWPKVDEKAL EQSEIELVLQVNGKVRGAVTVAKDASREAIEAVALAHEMFAKFSEGKPAKKVIVVPGRLVNVVV >Mature_864_residues MHEKYVPSDVESAAQGQWRATDAYKTTETADKPKFYCVSMLPYPSGKLHMGHVRNYTINDVMYRYLRMNGYNTLMPMGWD AFGMPAENAAMANGVPPAKWTYDNIAYMKKQMQSMGLAIDWSREVATCSPDYYKWNQWIFLKMLEKGIAYKKTGTVNWDP VDQTVLANEQVIDGRGWRSGALVEKREIPMYYMRITQYADELLNDLDGLGWPERVKVMQQNWIGKSFGVNFGFPYELDGE QKLLRVFTTRADTIMGVTFCAVAAEHPLATRLAQGRPDLQSFIDECKHGGVAEADMATMEKKGMATGFFVTHPLTQEKVE VWIGNYVLMSYGEGAVMGVPAHDERDFAFVKKYGIPVKQVVAVEGETFSTDAWQESYGDKENGVLINSGKYDGLKYGEAV DAIAADLKALGLGEKQVTWRLRDWGISRQRYWGTPIPIIHCPSCGDVPVPEKDLPVVLPEDLVPDGTGNPLAKSEAFLNC TCPTCGAAAKRETDTMDTFVDSSWYFYRYAAPDAKTMVDARTDYWMPMDQYIGGIEHAILHLLYSRFWAKVCRDLGIVKF GEPAKNLLTQGMVLNETYYRENDAGKKTWYNPADVTVTHDDKGRPVGATLNADGQPVVLGGVEKMSKSKNNGVDPQVLID QYGADTARLFTMFAAPPEQQLEWSGAGVEGASRFLRRVWAFGQANETALTERAPFDAAKLADTEKTLRREIYSVLKQADF DYQRLQYNTVVSAAMKMLNAIEGAKGASAAVLRETYGVLLRVLYPVVPHVTFQLWRELGYEGEFGSLLDAPWPKVDEKAL EQSEIELVLQVNGKVRGAVTVAKDASREAIEAVALAHEMFAKFSEGKPAKKVIVVPGRLVNVVV
Specific function: Unknown
COG id: COG0495
COG function: function code J; Leucyl-tRNA synthetase
Gene ontology:
Cell location: Cytoplasm
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the class-I aminoacyl-tRNA synthetase family
Homologues:
Organism=Homo sapiens, GI7661872, Length=864, Percent_Identity=36.3425925925926, Blast_Score=539, Evalue=1e-153, Organism=Escherichia coli, GI1786861, Length=871, Percent_Identity=50.1722158438576, Blast_Score=878, Evalue=0.0, Organism=Escherichia coli, GI1790708, Length=387, Percent_Identity=23.2558139534884, Blast_Score=90, Evalue=5e-19, Organism=Caenorhabditis elegans, GI71997510, Length=250, Percent_Identity=42.4, Blast_Score=219, Evalue=7e-57, Organism=Caenorhabditis elegans, GI71997517, Length=250, Percent_Identity=42.4, Blast_Score=219, Evalue=7e-57, Organism=Caenorhabditis elegans, GI212645227, Length=334, Percent_Identity=30.2395209580838, Blast_Score=146, Evalue=6e-35, Organism=Saccharomyces cerevisiae, GI6323414, Length=868, Percent_Identity=39.7465437788018, Blast_Score=574, Evalue=1e-164, Organism=Saccharomyces cerevisiae, GI6321531, Length=386, Percent_Identity=25.6476683937824, Blast_Score=103, Evalue=8e-23, Organism=Drosophila melanogaster, GI21355409, Length=862, Percent_Identity=35.1508120649652, Blast_Score=437, Evalue=1e-122, Organism=Drosophila melanogaster, GI281366294, Length=162, Percent_Identity=26.5432098765432, Blast_Score=66, Evalue=8e-11,
Paralogues:
None
Copy number: 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): SYL_BURP8 (B2JGX6)
Other databases:
- EMBL: CP001043 - RefSeq: YP_001858806.1 - GeneID: 6244071 - GenomeReviews: CP001043_GR - KEGG: bph:Bphy_2588 - HOGENOM: HBG693845 - OMA: REKFYCL - ProtClustDB: PRK00390 - GO: GO:0005737 - HAMAP: MF_00049_B - InterPro: IPR001412 - InterPro: IPR002300 - InterPro: IPR002302 - InterPro: IPR014729 - InterPro: IPR009080 - InterPro: IPR013155 - InterPro: IPR009008 - Gene3D: G3DSA:3.40.50.620 - PANTHER: PTHR11946:SF7 - PRINTS: PR00985 - TIGRFAMs: TIGR00396
Pfam domain/function: PF08264 Anticodon_1; PF00133 tRNA-synt_1; SSF47323 tRNAsyn_1a_bind; SSF50677 ValRS_IleRS_edit
EC number: =6.1.1.4
Molecular weight: Translated: 96523; Mature: 96523
Theoretical pI: Translated: 5.53; Mature: 5.53
Prosite motif: PS00178 AA_TRNA_LIGASE_I
Important sites: BINDING 627-627
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHEKYVPSDVESAAQGQWRATDAYKTTETADKPKFYCVSMLPYPSGKLHMGHVRNYTIND CCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHH VMYRYLRMNGYNTLMPMGWDAFGMPAENAAMANGVPPAKWTYDNIAYMKKQMQSMGLAID HHHHHHHHCCCCEECCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEE WSREVATCSPDYYKWNQWIFLKMLEKGIAYKKTGTVNWDPVDQTVLANEQVIDGRGWRSG CCCCCCCCCCCCEECCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHCCCEEECCCCCCCC ALVEKREIPMYYMRITQYADELLNDLDGLGWPERVKVMQQNWIGKSFGVNFGFPYELDGE CCEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCH QKLLRVFTTRADTIMGVTFCAVAAEHPLATRLAQGRPDLQSFIDECKHGGVAEADMATME HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH KKGMATGFFVTHPLTQEKVEVWIGNYVLMSYGEGAVMGVPAHDERDFAFVKKYGIPVKQV HCCCCCCEEEECCCCHHHHHHEECCEEEEECCCCCEEECCCCCCCCHHHHHHHCCCHHHE VAVEGETFSTDAWQESYGDKENGVLINSGKYDGLKYGEAVDAIAADLKALGLGEKQVTWR EEECCCCCCCCHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEEE LRDWGISRQRYWGTPIPIIHCPSCGDVPVPEKDLPVVLPEDLVPDGTGNPLAKSEAFLNC EHHCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCEECCHHCCCCCCCCCCCCCCCEEEE TCPTCGAAAKRETDTMDTFVDSSWYFYRYAAPDAKTMVDARTDYWMPMDQYIGGIEHAIL CCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCCCCHHHHHCHHHHHHH HLLYSRFWAKVCRDLGIVKFGEPAKNLLTQGMVLNETYYRENDAGKKTWYNPADVTVTHD HHHHHHHHHHHHHHCCCEECCCHHHHHHHCCEEECHHHHCCCCCCCCCCCCCCCEEEEEC DKGRPVGATLNADGQPVVLGGVEKMSKSKNNGVDPQVLIDQYGADTARLFTMFAAPPEQQ CCCCCEEEEECCCCCEEEECCHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHEECCCCHHH LEWSGAGVEGASRFLRRVWAFGQANETALTERAPFDAAKLADTEKTLRREIYSVLKQADF CEECCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC DYQRLQYNTVVSAAMKMLNAIEGAKGASAAVLRETYGVLLRVLYPVVPHVTFQLWRELGY CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EGEFGSLLDAPWPKVDEKALEQSEIELVLQVNGKVRGAVTVAKDASREAIEAVALAHEMF CCCCCCCCCCCCCCCCHHHHHHCCEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHH AKFSEGKPAKKVIVVPGRLVNVVV HHHCCCCCCCEEEEECCCEEEEEC >Mature Secondary Structure MHEKYVPSDVESAAQGQWRATDAYKTTETADKPKFYCVSMLPYPSGKLHMGHVRNYTIND CCCCCCCCHHHHHHCCCEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHH VMYRYLRMNGYNTLMPMGWDAFGMPAENAAMANGVPPAKWTYDNIAYMKKQMQSMGLAID HHHHHHHHCCCCEECCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCEEEE WSREVATCSPDYYKWNQWIFLKMLEKGIAYKKTGTVNWDPVDQTVLANEQVIDGRGWRSG CCCCCCCCCCCCEECCHHHHHHHHHHCCCEEECCCCCCCCCCCHHHCCCEEECCCCCCCC ALVEKREIPMYYMRITQYADELLNDLDGLGWPERVKVMQQNWIGKSFGVNFGFPYELDGE CCEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCH QKLLRVFTTRADTIMGVTFCAVAAEHPLATRLAQGRPDLQSFIDECKHGGVAEADMATME HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHH KKGMATGFFVTHPLTQEKVEVWIGNYVLMSYGEGAVMGVPAHDERDFAFVKKYGIPVKQV HCCCCCCEEEECCCCHHHHHHEECCEEEEECCCCCEEECCCCCCCCHHHHHHHCCCHHHE VAVEGETFSTDAWQESYGDKENGVLINSGKYDGLKYGEAVDAIAADLKALGLGEKQVTWR EEECCCCCCCCHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHEEEE LRDWGISRQRYWGTPIPIIHCPSCGDVPVPEKDLPVVLPEDLVPDGTGNPLAKSEAFLNC EHHCCCCCHHCCCCCCCEEECCCCCCCCCCCCCCCEECCHHCCCCCCCCCCCCCCCEEEE TCPTCGAAAKRETDTMDTFVDSSWYFYRYAAPDAKTMVDARTDYWMPMDQYIGGIEHAIL CCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCCCCHHHHHCHHHHHHH HLLYSRFWAKVCRDLGIVKFGEPAKNLLTQGMVLNETYYRENDAGKKTWYNPADVTVTHD HHHHHHHHHHHHHHCCCEECCCHHHHHHHCCEEECHHHHCCCCCCCCCCCCCCCEEEEEC DKGRPVGATLNADGQPVVLGGVEKMSKSKNNGVDPQVLIDQYGADTARLFTMFAAPPEQQ CCCCCEEEEECCCCCEEEECCHHHHHCCCCCCCCHHHHHHHCCCCHHHHHHEECCCCHHH LEWSGAGVEGASRFLRRVWAFGQANETALTERAPFDAAKLADTEKTLRREIYSVLKQADF CEECCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC DYQRLQYNTVVSAAMKMLNAIEGAKGASAAVLRETYGVLLRVLYPVVPHVTFQLWRELGY CHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC EGEFGSLLDAPWPKVDEKALEQSEIELVLQVNGKVRGAVTVAKDASREAIEAVALAHEMF CCCCCCCCCCCCCCCCHHHHHHCCEEEEEEECCCEEEEEEEECCCCHHHHHHHHHHHHHH AKFSEGKPAKKVIVVPGRLVNVVV HHHCCCCCCCEEEEECCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA