Click here to switch to the map view.

The map label for this gene is perM [C]

Identifier: 186477237

GI number: 186477237

Start: 2798816

End: 2799892

Strand: Direct

Name: perM [C]

Synonym: Bphy_2488

Alternate gene names: 186477237

Gene position: 2798816-2799892 (Clockwise)

Preceding gene: 186477235

Following gene: 186477238

Centisome position: 80.44

GC content: 63.32

Gene sequence:

>1077_bases
TTGCAGCAAAACAGTCCGATCCTCACGCCGTACCAGCGCCGCGCCTTTATCTGGCTTGCCATTGCGCTTGCCGTGGGCAT
TCTGCTCTGGCTGTTGAGCCCTGTGCTCACGCCGTTCCTGCTCGGCGCGATTCTCGCGTATATCCTGCAGCCCGGCGTCG
CGTGGATGACGCGCCGCCGCGTACCGCGCGGCCTCGCCGCGTCGCTGATGATCCTGTTCTTCGTCGCGATCGTCACGCTG
CTCGGGCTGCTCGTGCTGGGCGTGATCCAGAAGGAAGTGCCGCAGCTCAAGCAGCAAGTGCCCATGTTTTTCTCGCACCT
GCATGGCTGGCTCACGCCGAAACTTGCCGTGCTGGGCGTGAGCGACTCGCTCGATTTCGCCAGCATCCGCGACATGGTGA
TGGGCCAGCTCGAAGGCAGCGCGCAGACGGTCGCGCTCTATGCGTGGACGTCGATACGCACCAGTTCGAATGTGATGATC
ACGGTGGTCGGCAACGTGGTGATGGTTCCGCTCGTGCTGTTCTATCTGCTGTACGACTGGAACGCGATGCTCGCGCGCGT
GCGCGGCTTCATTCCCCGCCGCTGGTTCGCCAAGACGATCCATCTGGCACGCGACATGGATCACATGCTGTCGCAATACC
TGCGCGGCCAGCTGCTCGTGATGGGCGTGCTCGCGGTGTTCTACGCGGCCGCGCTGTATATCGCCGGTTTCGAAATTGCG
CTCCCCGTCGGCATCTTTACGGGGCTCGCGGTGTTTATACCGTATCTCGGCTTCGCGACGGGCCTCGTGCTCGCGCTCCT
CGCCGCGTTGCTGCAGTTCGGCAACTGGTACGGCTTCGGCGCCGTCGCGGTGATCTACGGCGTGGGTCAGATCCTCGAAA
GTTTCTTCCTGACGCCGCGGCTCGTCGGCGAACGGATCGGTCTGCATCCGCTCGCGGTGATCTTCGCGCTGCTCGCGTTC
GGCCAGCTGTTCGGCTTTTTCGGCGTGCTGCTCGCGCTGCCCGTCAGCGCGATGCTCTCCGTCGCGTTTCACGAGCTGCG
GCAGAGCTATCTGTCGAGTTCGCTTTACAAGAACTGA

Upstream 100 bases:

>100_bases
CATGGGGGGAGTGCTCGAAGGTCGGTAAAATGCGATTTTACCCGATGCCGGCCGCGTGGCTGGAATTTGAGACGCCGACA
CGACACCTGGGAAATCCGCT

Downstream 100 bases:

>100_bases
TCGCAAACCGGGTCATATAACGGGTTACCAGGGCTTATTGACGGTCTTCCTATCGTGTCGCGCCAATTGACGCTCGATCT
CGGCACCCCGCCGCCATCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MQQNSPILTPYQRRAFIWLAIALAVGILLWLLSPVLTPFLLGAILAYILQPGVAWMTRRRVPRGLAASLMILFFVAIVTL
LGLLVLGVIQKEVPQLKQQVPMFFSHLHGWLTPKLAVLGVSDSLDFASIRDMVMGQLEGSAQTVALYAWTSIRTSSNVMI
TVVGNVVMVPLVLFYLLYDWNAMLARVRGFIPRRWFAKTIHLARDMDHMLSQYLRGQLLVMGVLAVFYAAALYIAGFEIA
LPVGIFTGLAVFIPYLGFATGLVLALLAALLQFGNWYGFGAVAVIYGVGQILESFFLTPRLVGERIGLHPLAVIFALLAF
GQLFGFFGVLLALPVSAMLSVAFHELRQSYLSSSLYKN

Sequences:

>Translated_358_residues
MQQNSPILTPYQRRAFIWLAIALAVGILLWLLSPVLTPFLLGAILAYILQPGVAWMTRRRVPRGLAASLMILFFVAIVTL
LGLLVLGVIQKEVPQLKQQVPMFFSHLHGWLTPKLAVLGVSDSLDFASIRDMVMGQLEGSAQTVALYAWTSIRTSSNVMI
TVVGNVVMVPLVLFYLLYDWNAMLARVRGFIPRRWFAKTIHLARDMDHMLSQYLRGQLLVMGVLAVFYAAALYIAGFEIA
LPVGIFTGLAVFIPYLGFATGLVLALLAALLQFGNWYGFGAVAVIYGVGQILESFFLTPRLVGERIGLHPLAVIFALLAF
GQLFGFFGVLLALPVSAMLSVAFHELRQSYLSSSLYKN
>Mature_358_residues
MQQNSPILTPYQRRAFIWLAIALAVGILLWLLSPVLTPFLLGAILAYILQPGVAWMTRRRVPRGLAASLMILFFVAIVTL
LGLLVLGVIQKEVPQLKQQVPMFFSHLHGWLTPKLAVLGVSDSLDFASIRDMVMGQLEGSAQTVALYAWTSIRTSSNVMI
TVVGNVVMVPLVLFYLLYDWNAMLARVRGFIPRRWFAKTIHLARDMDHMLSQYLRGQLLVMGVLAVFYAAALYIAGFEIA
LPVGIFTGLAVFIPYLGFATGLVLALLAALLQFGNWYGFGAVAVIYGVGQILESFFLTPRLVGERIGLHPLAVIFALLAF
GQLFGFFGVLLALPVSAMLSVAFHELRQSYLSSSLYKN

Specific function: Unknown

COG id: COG0628

COG function: function code R; Predicted permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0118 (perM) family [H]

Homologues:

Organism=Escherichia coli, GI1788838, Length=347, Percent_Identity=27.9538904899135, Blast_Score=112, Evalue=5e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002549 [H]

Pfam domain/function: PF01594 UPF0118 [H]

EC number: NA

Molecular weight: Translated: 39512; Mature: 39512

Theoretical pI: Translated: 10.27; Mature: 10.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQQNSPILTPYQRRAFIWLAIALAVGILLWLLSPVLTPFLLGAILAYILQPGVAWMTRRR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
VPRGLAASLMILFFVAIVTLLGLLVLGVIQKEVPQLKQQVPMFFSHLHGWLTPKLAVLGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEC
SDSLDFASIRDMVMGQLEGSAQTVALYAWTSIRTSSNVMITVVGNVVMVPLVLFYLLYDW
CCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
NAMLARVRGFIPRRWFAKTIHLARDMDHMLSQYLRGQLLVMGVLAVFYAAALYIAGFEIA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPVGIFTGLAVFIPYLGFATGLVLALLAALLQFGNWYGFGAVAVIYGVGQILESFFLTPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH
LVGERIGLHPLAVIFALLAFGQLFGFFGVLLALPVSAMLSVAFHELRQSYLSSSLYKN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQQNSPILTPYQRRAFIWLAIALAVGILLWLLSPVLTPFLLGAILAYILQPGVAWMTRRR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHC
VPRGLAASLMILFFVAIVTLLGLLVLGVIQKEVPQLKQQVPMFFSHLHGWLTPKLAVLGV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHEEEC
SDSLDFASIRDMVMGQLEGSAQTVALYAWTSIRTSSNVMITVVGNVVMVPLVLFYLLYDW
CCCCHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHH
NAMLARVRGFIPRRWFAKTIHLARDMDHMLSQYLRGQLLVMGVLAVFYAAALYIAGFEIA
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LPVGIFTGLAVFIPYLGFATGLVLALLAALLQFGNWYGFGAVAVIYGVGQILESFFLTPR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCHH
LVGERIGLHPLAVIFALLAFGQLFGFFGVLLALPVSAMLSVAFHELRQSYLSSSLYKN
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]