| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is ydhP [H]
Identifier: 186477181
GI number: 186477181
Start: 2734112
End: 2735269
Strand: Direct
Name: ydhP [H]
Synonym: Bphy_2432
Alternate gene names: 186477181
Gene position: 2734112-2735269 (Clockwise)
Preceding gene: 186477180
Following gene: 186477182
Centisome position: 78.58
GC content: 67.01
Gene sequence:
>1158_bases ATGCCTTTGCCCCTGCTCGCACTCGCCGTCGCTGCGTTTGGAATCGGTACCACCGAGTTCGTCATCATGGGGCTGCTGCC CGATGTCGCGCGCGATCTGGGCGTGTCGATCCCGGCCGCGGGGATGCTGGTGTCGGCGTATGCGCTCGGCGTGACGATCG GCGCGCCGATCGTTGCGCTCGCGGTCGCCAACATGCCGCGCAAGAAGGCGCTGATGTGTCTGATCGGCATCTTCATTTTC GGCAATCTGCTGTGCGCGATCGCGCCGGGCTATGCGGTGCTGATGGCCGCGCGCATCGTGACCGCGTTCTGCCACGGTGC GTTTTTCGGCATCGGTTCCGTCGTCGCCGCCGGGCTTGTTGCGCCGAACCGCCGCGCGCAGGCGATCGCGCTGATGTTCA CGGGTCTCACGCTTGCCAACGTGCTCGGCGTGCCGCTCGGCACTGCGCTTGGCCAGGCCGTCGGCTGGCGCGCGACCTTC TGGGCAGTGACGGTTATCGGCGTGCTGGCGGCCGTCGCGCTCGCGCTTTGTCTGCCGCCGAAGATCGAGATGCAGAAAGC CAGCCTCATCCACGAGTTCACGGTGCTGAAGAACCCGCAGGTGCTGATGGTGCTCGGCACGAGTGTCCTCGCGTCTGCAA GCCTGTTCTCGACCTTCACCTACATCACGCCGATTCTCGAAGACGTGACGGGCTTCACGCCGCACGCCGTGACGATGGTG CTGCTGCTGTTCGGGCTCGGGCTGACCGTGGGCAGCACGCTCGGCGGCAAGCTCGCCGACTGGCGCCCCGTGCAGTCCCT GCTGTCGTTCCTGCTCGCGATCGTCGCGATCCTGTCGATCTTCGCGATGACGATGCACAGCGAAATCCCCGCGATGGTCA CCATCTTCCTGTGGGGCGTCCTCGCGTTCGCGATCGTGCCGCCGCTGCAGATGCTGATCGTCGATCGTGCAAGCAGTGCA CCGAATCTGGCCTCGACGCTCAACCAGGGTGCGTTCAATCTCGGCAATGCGACGGGTGCGTGGCTCGGCGGCATGGCGAT CGGCGCAGGCGCGCCGCTCACGTCCCTGCCGTGGATCGGCGTCGCGACGGCGGCGGGCGCGGTGGCGCTGACGTGGTGGT CGGTGTCGCTCGACGGGCGTTTGCGTGCAGCGGGCTGA
Upstream 100 bases:
>100_bases GATTTACGCTTGCCGACGTCTGCGTACTCATCCCGAACGCGCGCGACGGCAACACGTGCGGCGCTTCCTTCCGCCGCGCC TCTCTCGCAAAAGTCCCATC
Downstream 100 bases:
>100_bases GCGGCCAATCGCGCATGGCCGTCATCAGAGAGCCCCGATGATGCCAATGACAGACGGGCGGTGTAGCATCTCGCCCGATG AAAGTCGTCTTCTCCCGTGA
Product: major facilitator transporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 385; Mature: 384
Protein sequence:
>385_residues MPLPLLALAVAAFGIGTTEFVIMGLLPDVARDLGVSIPAAGMLVSAYALGVTIGAPIVALAVANMPRKKALMCLIGIFIF GNLLCAIAPGYAVLMAARIVTAFCHGAFFGIGSVVAAGLVAPNRRAQAIALMFTGLTLANVLGVPLGTALGQAVGWRATF WAVTVIGVLAAVALALCLPPKIEMQKASLIHEFTVLKNPQVLMVLGTSVLASASLFSTFTYITPILEDVTGFTPHAVTMV LLLFGLGLTVGSTLGGKLADWRPVQSLLSFLLAIVAILSIFAMTMHSEIPAMVTIFLWGVLAFAIVPPLQMLIVDRASSA PNLASTLNQGAFNLGNATGAWLGGMAIGAGAPLTSLPWIGVATAAGAVALTWWSVSLDGRLRAAG
Sequences:
>Translated_385_residues MPLPLLALAVAAFGIGTTEFVIMGLLPDVARDLGVSIPAAGMLVSAYALGVTIGAPIVALAVANMPRKKALMCLIGIFIF GNLLCAIAPGYAVLMAARIVTAFCHGAFFGIGSVVAAGLVAPNRRAQAIALMFTGLTLANVLGVPLGTALGQAVGWRATF WAVTVIGVLAAVALALCLPPKIEMQKASLIHEFTVLKNPQVLMVLGTSVLASASLFSTFTYITPILEDVTGFTPHAVTMV LLLFGLGLTVGSTLGGKLADWRPVQSLLSFLLAIVAILSIFAMTMHSEIPAMVTIFLWGVLAFAIVPPLQMLIVDRASSA PNLASTLNQGAFNLGNATGAWLGGMAIGAGAPLTSLPWIGVATAAGAVALTWWSVSLDGRLRAAG >Mature_384_residues PLPLLALAVAAFGIGTTEFVIMGLLPDVARDLGVSIPAAGMLVSAYALGVTIGAPIVALAVANMPRKKALMCLIGIFIFG NLLCAIAPGYAVLMAARIVTAFCHGAFFGIGSVVAAGLVAPNRRAQAIALMFTGLTLANVLGVPLGTALGQAVGWRATFW AVTVIGVLAAVALALCLPPKIEMQKASLIHEFTVLKNPQVLMVLGTSVLASASLFSTFTYITPILEDVTGFTPHAVTMVL LLFGLGLTVGSTLGGKLADWRPVQSLLSFLLAIVAILSIFAMTMHSEIPAMVTIFLWGVLAFAIVPPLQMLIVDRASSAP NLASTLNQGAFNLGNATGAWLGGMAIGAGAPLTSLPWIGVATAAGAVALTWWSVSLDGRLRAAG
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily [H]
Homologues:
Organism=Escherichia coli, GI1787947, Length=371, Percent_Identity=48.5175202156334, Blast_Score=300, Evalue=1e-82, Organism=Escherichia coli, GI1786595, Length=353, Percent_Identity=33.9943342776204, Blast_Score=218, Evalue=6e-58, Organism=Escherichia coli, GI1787808, Length=382, Percent_Identity=30.3664921465969, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI145693198, Length=347, Percent_Identity=27.3775216138329, Blast_Score=102, Evalue=4e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 39513; Mature: 39382
Theoretical pI: Translated: 9.35; Mature: 9.35
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLPLLALAVAAFGIGTTEFVIMGLLPDVARDLGVSIPAAGMLVSAYALGVTIGAPIVAL CCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH AVANMPRKKALMCLIGIFIFGNLLCAIAPGYAVLMAARIVTAFCHGAFFGIGSVVAAGLV HHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APNRRAQAIALMFTGLTLANVLGVPLGTALGQAVGWRATFWAVTVIGVLAAVALALCLPP CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC KIEMQKASLIHEFTVLKNPQVLMVLGTSVLASASLFSTFTYITPILEDVTGFTPHAVTMV CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LLLFGLGLTVGSTLGGKLADWRPVQSLLSFLLAIVAILSIFAMTMHSEIPAMVTIFLWGV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LAFAIVPPLQMLIVDRASSAPNLASTLNQGAFNLGNATGAWLGGMAIGAGAPLTSLPWIG HHHHHHCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH VATAAGAVALTWWSVSLDGRLRAAG HHHHCCCEEEEEEEEEECCEEECCC >Mature Secondary Structure PLPLLALAVAAFGIGTTEFVIMGLLPDVARDLGVSIPAAGMLVSAYALGVTIGAPIVAL CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH AVANMPRKKALMCLIGIFIFGNLLCAIAPGYAVLMAARIVTAFCHGAFFGIGSVVAAGLV HHHCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC APNRRAQAIALMFTGLTLANVLGVPLGTALGQAVGWRATFWAVTVIGVLAAVALALCLPP CCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC KIEMQKASLIHEFTVLKNPQVLMVLGTSVLASASLFSTFTYITPILEDVTGFTPHAVTMV CCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH LLLFGLGLTVGSTLGGKLADWRPVQSLLSFLLAIVAILSIFAMTMHSEIPAMVTIFLWGV HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH LAFAIVPPLQMLIVDRASSAPNLASTLNQGAFNLGNATGAWLGGMAIGAGAPLTSLPWIG HHHHHHCHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCHH VATAAGAVALTWWSVSLDGRLRAAG HHHHCCCEEEEEEEEEECCEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]