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The map label for this gene is xylR [H]

Identifier: 186477094

GI number: 186477094

Start: 2629396

End: 2630640

Strand: Direct

Name: xylR [H]

Synonym: Bphy_2343

Alternate gene names: 186477094

Gene position: 2629396-2630640 (Clockwise)

Preceding gene: 186477086

Following gene: 186477095

Centisome position: 75.58

GC content: 62.97

Gene sequence:

>1245_bases
ATGACACGACAGCACAGCGCTCAGCGCACGCACCGGATCGCACTGCTCTTCAATGCGAACAAGGTGTACGACCGCGAGAT
CATCACGGGTATCGGCAATTACCTGCTGTCGACGCGCGTCGCGTGGGATCTGTTTCTCGAAGAAGATTTTCGCGCCCGGC
TCAACGGCATCGAGCACTTCGAAGGCGATGGCTTTATCGCCGATTTCGACGATCCCGCCGTATGCGAAGCACTCTCCGAT
TCGCTGCTGCCCGTCGTGGCTGTCGGCGGATCGTATGAAGACGCGGCCGCCTATCCGCCGAATCTGCCGTACATCGCGAC
CGACAACATGCAGCTCGTGTCGCTCGCCTACAAACATCTGATCGGCGCCGGGCTGCAACGCTTCGCGCTATATAGCCTGC
CCGAATCGCCGACCAACCGCTGGGCGCAGGAACGCGAGCGCGCGTTCAACGCGCTATTGAAAGCGGACGGACTCGAAGGC
GATGTGCATCGCGGCTTGCCGACGAGCGCACCCGTCTGGCACCAGGCGAGCGTGCAACTGACGGAATGGCTGCAAAGCCT
GCCGAAGCCCGTGGGCATCATCGCGGTGACGGACGCGCGCGCACGCCAGCTGTTGCAGGCGTGTCTGATCAGCGGCATTC
CCGTGCCCGAACAGGTCGCGATCATCGGCATCGACAACGACCCATTGACGCGTTCGCTCACGCGCATTCCCCTTTCCTCC
GTGATTCAGGGCACCGAGGAAATGGGCCGCACCGCGGCGCACCTGCTGCATCAGATGCTCGGCGGCGCACGCTTTGCGGG
TCGCCGCATCCTCGTGCCGCCCGTCGGCATCAACGTGTGCGAATCGACGAAACACGAGCCGCTCGCGAGCCCCTATGTGA
TGCGCGCGCGTCACTACATCCGCCAGTACGCGTGCCAGGGCATCAAGACGGAGCAGGTCGCCGATTATGTGGGCGTGTCG
CGTTCGTCGCTCGAAGACTACTTCCGGCGCGAACTCGGCTGCACCGTGCATCAGGAAATCCTCAAGCACAAGCTCGATGT
CGCGAAGCAACTGCTCGCGCAGCAGGACATGTCGAGCGCGGAAGTCGCGATACGCTGCGGCTTCACTTCATTGCAATACA
TGTATGCCGTGTTCCGGCGCGAACTCGATTGCACGCCGCGCGAGTATCAGGAGCGACTGCACGCGGCGCAGTCCGTACCA
TCCGCGCCGTCCACACCCGATGCGCCCTCCGCCCAAATGCCTTAA

Upstream 100 bases:

>100_bases
ACACTTAAAAGGTGCAGGTGCATTGCAGTGCAGCACGCGCAGATATCGCGCACCTCATGCGGAGACAACGCGGCGTCCAG
GCGCCGGGCCCGGAGAATCG

Downstream 100 bases:

>100_bases
TCTGGTTCGATCCGCGACCGACATGAATCTCGCCGACATGCACAGCACCGACACTTCTCTCTCCCCCAGCGTCCAGGTCG
AACGCTGGGGCACGTTGCCC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MTRQHSAQRTHRIALLFNANKVYDREIITGIGNYLLSTRVAWDLFLEEDFRARLNGIEHFEGDGFIADFDDPAVCEALSD
SLLPVVAVGGSYEDAAAYPPNLPYIATDNMQLVSLAYKHLIGAGLQRFALYSLPESPTNRWAQERERAFNALLKADGLEG
DVHRGLPTSAPVWHQASVQLTEWLQSLPKPVGIIAVTDARARQLLQACLISGIPVPEQVAIIGIDNDPLTRSLTRIPLSS
VIQGTEEMGRTAAHLLHQMLGGARFAGRRILVPPVGINVCESTKHEPLASPYVMRARHYIRQYACQGIKTEQVADYVGVS
RSSLEDYFRRELGCTVHQEILKHKLDVAKQLLAQQDMSSAEVAIRCGFTSLQYMYAVFRRELDCTPREYQERLHAAQSVP
SAPSTPDAPSAQMP

Sequences:

>Translated_414_residues
MTRQHSAQRTHRIALLFNANKVYDREIITGIGNYLLSTRVAWDLFLEEDFRARLNGIEHFEGDGFIADFDDPAVCEALSD
SLLPVVAVGGSYEDAAAYPPNLPYIATDNMQLVSLAYKHLIGAGLQRFALYSLPESPTNRWAQERERAFNALLKADGLEG
DVHRGLPTSAPVWHQASVQLTEWLQSLPKPVGIIAVTDARARQLLQACLISGIPVPEQVAIIGIDNDPLTRSLTRIPLSS
VIQGTEEMGRTAAHLLHQMLGGARFAGRRILVPPVGINVCESTKHEPLASPYVMRARHYIRQYACQGIKTEQVADYVGVS
RSSLEDYFRRELGCTVHQEILKHKLDVAKQLLAQQDMSSAEVAIRCGFTSLQYMYAVFRRELDCTPREYQERLHAAQSVP
SAPSTPDAPSAQMP
>Mature_413_residues
TRQHSAQRTHRIALLFNANKVYDREIITGIGNYLLSTRVAWDLFLEEDFRARLNGIEHFEGDGFIADFDDPAVCEALSDS
LLPVVAVGGSYEDAAAYPPNLPYIATDNMQLVSLAYKHLIGAGLQRFALYSLPESPTNRWAQERERAFNALLKADGLEGD
VHRGLPTSAPVWHQASVQLTEWLQSLPKPVGIIAVTDARARQLLQACLISGIPVPEQVAIIGIDNDPLTRSLTRIPLSSV
IQGTEEMGRTAAHLLHQMLGGARFAGRRILVPPVGINVCESTKHEPLASPYVMRARHYIRQYACQGIKTEQVADYVGVSR
SSLEDYFRRELGCTVHQEILKHKLDVAKQLLAQQDMSSAEVAIRCGFTSLQYMYAVFRRELDCTPREYQERLHAAQSVPS
APSTPDAPSAQMP

Specific function: Regulatory protein for the xylBAFGHR operon [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789993, Length=383, Percent_Identity=50.9138381201044, Blast_Score=398, Evalue=1e-112,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 45971; Mature: 45840

Theoretical pI: Translated: 6.57; Mature: 6.57

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRQHSAQRTHRIALLFNANKVYDREIITGIGNYLLSTRVAWDLFLEEDFRARLNGIEHF
CCCCHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
EGDGFIADFDDPAVCEALSDSLLPVVAVGGSYEDAAAYPPNLPYIATDNMQLVSLAYKHL
CCCCEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHH
IGAGLQRFALYSLPESPTNRWAQERERAFNALLKADGLEGDVHRGLPTSAPVWHQASVQL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHH
TEWLQSLPKPVGIIAVTDARARQLLQACLISGIPVPEQVAIIGIDNDPLTRSLTRIPLSS
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCHHH
VIQGTEEMGRTAAHLLHQMLGGARFAGRRILVPPVGINVCESTKHEPLASPYVMRARHYI
HHHCHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHH
RQYACQGIKTEQVADYVGVSRSSLEDYFRRELGCTVHQEILKHKLDVAKQLLAQQDMSSA
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
EVAIRCGFTSLQYMYAVFRRELDCTPREYQERLHAAQSVPSAPSTPDAPSAQMP
CEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TRQHSAQRTHRIALLFNANKVYDREIITGIGNYLLSTRVAWDLFLEEDFRARLNGIEHF
CCCHHHHHHEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEE
EGDGFIADFDDPAVCEALSDSLLPVVAVGGSYEDAAAYPPNLPYIATDNMQLVSLAYKHL
CCCCEEECCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEECCCHHHHHHHHHHH
IGAGLQRFALYSLPESPTNRWAQERERAFNALLKADGLEGDVHRGLPTSAPVWHQASVQL
HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHH
TEWLQSLPKPVGIIAVTDARARQLLQACLISGIPVPEQVAIIGIDNDPLTRSLTRIPLSS
HHHHHHCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHCCHHH
VIQGTEEMGRTAAHLLHQMLGGARFAGRRILVPPVGINVCESTKHEPLASPYVMRARHYI
HHHCHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCCHHCCCCCCCCCCHHHHHHHHHH
RQYACQGIKTEQVADYVGVSRSSLEDYFRRELGCTVHQEILKHKLDVAKQLLAQQDMSSA
HHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCC
EVAIRCGFTSLQYMYAVFRRELDCTPREYQERLHAAQSVPSAPSTPDAPSAQMP
CEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]