| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186477026
Identifier: 186477026
GI number: 186477026
Start: 2549643
End: 2551064
Strand: Direct
Name: 186477026
Synonym: Bphy_2275
Alternate gene names: NA
Gene position: 2549643-2551064 (Clockwise)
Preceding gene: 186477025
Following gene: 186477027
Centisome position: 73.28
GC content: 58.93
Gene sequence:
>1422_bases ATGTCAGATCCCGCAATTCCGCTGTGTGTGGACCTGGACGGCACGCTCACACGCGCTGATTTCCTCTTCGAAAGTTTCTT CGTGCTGCTCAAGCAGCAGCCACTATCGATATTCCTCTGCCTGTTCTGGCTGCTGCGCGGCAAAGCCTATCTGAAGGAGC AGATCGCACTGCGTGTGACGCTCGATGTCGGCGTGCTGCCCTATAACGGCCAACTGGTCGATTATCTGCGCGAAGCGCGC TCGGCCGGGCGGCCGCTCTACCTGTGCACGGCGGCTAACCAGCGATTCGCAAGCCAGGTGGCGGCTCACTTCGGCATGTT CAGCGGCGTACTCGCAAGCAATGCGAGCCTCAATCTGCACGGCGAGCATAAGGCTGCAGCCCTCGTCGAGCAGTTCGGCG AACACGGCTTTGACTACTGCGGTGATGCGCGCGCAGACGTACCCGTGTGGCAGCGCGCACGCCGGGCAATCGTCGTTGGC AACCAGCACATCGCTAATATTGCGCGCAAGGTGAATAGCGAAATTGTGTTCTTCGAAGAGAAACGCCATCTGATTCCACT CATGCTCAAGGAAATGCGCGTGCATCAGTGGGTCAAGAACTGTTTGATCTTTGTGCCGCTTCTTCTCGGGCACCGCTTCG ATGACTTGCAGGCGGTGCTCGCGGCCTGTATCGCGTTTGCATCGTTCAGCCTGTGCGCGTCATCCGTCTATCTGCTCAAC GACATGCTCGACCTGGATGTCGATCGTCGCCATCCGCGCAAGCACAGCCGACCGTTCGCATCGGGCAAGCTGCCGCTCTC GCTGGGTATCGTGCTTACGATTGTGCTGCTCGGTGCTGGACTTGGGCTCGCTGCCCTGCTGCCCTGGCAGTTCGGCGCCG TGCTCATTGCGTACATGGCCGCCACAGTCGCCTATTCGTTCGTGCTCAAGCGGATCGCGCTAATCGATGTATTCACCCTG GCCGGCCTCTACACGGTGCGCGTGATCGCTGGCGGTGAATGCAACAACATCCCGCTGTCTTACTGGCTGATTCTTTTCAG CGTGCCCATCTTCCTGAGCCTCGCCATGCTCAAGCGCTATGTCGAACTCGAGGCCATGCTTCAGCAGGGCAAGACGGAGG CAGCAGGGCGTGGCTATCTTACGCAGGACATGTCGATCCTGCGCTCCTATGGCACGGCGGCCGGCTATCTCGCCGTACTC GTGCTCGCGCTTTACCTGAATTCGCCCGAGTTCAAGCTGCTCTACCATCATCCGAAGATGCTGTGGGCTGTGTTCGGACT TACGCTCTATTGGGTAAGCCGCATCTGGATGCTCGCGTTTCGCGGACAGATGAACGATGACCCAATCGTCTTCACGTTCA AGGACCGCGTGAGTTGCAGCGTCATCGGATTGTGCGGCGTCTTCATGTTACTGGCGATCTGA
Upstream 100 bases:
>100_bases GCGTACATATCGACGCACAACCATGCCCTACGCTTTTCCCCTCAATCCGGCATAGCGCATGTGCTGCGATCCCTCCGAAC AGGCGCAATAAGGTATCGAT
Downstream 100 bases:
>100_bases TGAATGCGAAAGGGTGTCGAGGCACCCCTTCTTCATGAGAGCTAGCGCAGGAAGCGCGTCAAGAGAAATTCTTCTTGCCA ATCAGCTTTGATCAATTTTA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 473; Mature: 472
Protein sequence:
>473_residues MSDPAIPLCVDLDGTLTRADFLFESFFVLLKQQPLSIFLCLFWLLRGKAYLKEQIALRVTLDVGVLPYNGQLVDYLREAR SAGRPLYLCTAANQRFASQVAAHFGMFSGVLASNASLNLHGEHKAAALVEQFGEHGFDYCGDARADVPVWQRARRAIVVG NQHIANIARKVNSEIVFFEEKRHLIPLMLKEMRVHQWVKNCLIFVPLLLGHRFDDLQAVLAACIAFASFSLCASSVYLLN DMLDLDVDRRHPRKHSRPFASGKLPLSLGIVLTIVLLGAGLGLAALLPWQFGAVLIAYMAATVAYSFVLKRIALIDVFTL AGLYTVRVIAGGECNNIPLSYWLILFSVPIFLSLAMLKRYVELEAMLQQGKTEAAGRGYLTQDMSILRSYGTAAGYLAVL VLALYLNSPEFKLLYHHPKMLWAVFGLTLYWVSRIWMLAFRGQMNDDPIVFTFKDRVSCSVIGLCGVFMLLAI
Sequences:
>Translated_473_residues MSDPAIPLCVDLDGTLTRADFLFESFFVLLKQQPLSIFLCLFWLLRGKAYLKEQIALRVTLDVGVLPYNGQLVDYLREAR SAGRPLYLCTAANQRFASQVAAHFGMFSGVLASNASLNLHGEHKAAALVEQFGEHGFDYCGDARADVPVWQRARRAIVVG NQHIANIARKVNSEIVFFEEKRHLIPLMLKEMRVHQWVKNCLIFVPLLLGHRFDDLQAVLAACIAFASFSLCASSVYLLN DMLDLDVDRRHPRKHSRPFASGKLPLSLGIVLTIVLLGAGLGLAALLPWQFGAVLIAYMAATVAYSFVLKRIALIDVFTL AGLYTVRVIAGGECNNIPLSYWLILFSVPIFLSLAMLKRYVELEAMLQQGKTEAAGRGYLTQDMSILRSYGTAAGYLAVL VLALYLNSPEFKLLYHHPKMLWAVFGLTLYWVSRIWMLAFRGQMNDDPIVFTFKDRVSCSVIGLCGVFMLLAI >Mature_472_residues SDPAIPLCVDLDGTLTRADFLFESFFVLLKQQPLSIFLCLFWLLRGKAYLKEQIALRVTLDVGVLPYNGQLVDYLREARS AGRPLYLCTAANQRFASQVAAHFGMFSGVLASNASLNLHGEHKAAALVEQFGEHGFDYCGDARADVPVWQRARRAIVVGN QHIANIARKVNSEIVFFEEKRHLIPLMLKEMRVHQWVKNCLIFVPLLLGHRFDDLQAVLAACIAFASFSLCASSVYLLND MLDLDVDRRHPRKHSRPFASGKLPLSLGIVLTIVLLGAGLGLAALLPWQFGAVLIAYMAATVAYSFVLKRIALIDVFTLA GLYTVRVIAGGECNNIPLSYWLILFSVPIFLSLAMLKRYVELEAMLQQGKTEAAGRGYLTQDMSILRSYGTAAGYLAVLV LALYLNSPEFKLLYHHPKMLWAVFGLTLYWVSRIWMLAFRGQMNDDPIVFTFKDRVSCSVIGLCGVFMLLAI
Specific function: Possible permease/transporter [H]
COG id: COG0382
COG function: function code H; 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR000537 [H]
Pfam domain/function: PF01040 UbiA [H]
EC number: NA
Molecular weight: Translated: 52778; Mature: 52647
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDPAIPLCVDLDGTLTRADFLFESFFVLLKQQPLSIFLCLFWLLRGKAYLKEQIALRVT CCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHEEEEE LDVGVLPYNGQLVDYLREARSAGRPLYLCTAANQRFASQVAAHFGMFSGVLASNASLNLH EEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEC GEHKAAALVEQFGEHGFDYCGDARADVPVWQRARRAIVVGNQHIANIARKVNSEIVFFEE CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEEC KRHLIPLMLKEMRVHQWVKNCLIFVPLLLGHRFDDLQAVLAACIAFASFSLCASSVYLLN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DMLDLDVDRRHPRKHSRPFASGKLPLSLGIVLTIVLLGAGLGLAALLPWQFGAVLIAYMA HHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH ATVAYSFVLKRIALIDVFTLAGLYTVRVIAGGECNNIPLSYWLILFSVPIFLSLAMLKRY HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VELEAMLQQGKTEAAGRGYLTQDMSILRSYGTAAGYLAVLVLALYLNSPEFKLLYHHPKM HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECHHH LWAVFGLTLYWVSRIWMLAFRGQMNDDPIVFTFKDRVSCSVIGLCGVFMLLAI HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC >Mature Secondary Structure SDPAIPLCVDLDGTLTRADFLFESFFVLLKQQPLSIFLCLFWLLRGKAYLKEQIALRVT CCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCHHHHHHHHEEEEE LDVGVLPYNGQLVDYLREARSAGRPLYLCTAANQRFASQVAAHFGMFSGVLASNASLNLH EEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEC GEHKAAALVEQFGEHGFDYCGDARADVPVWQRARRAIVVGNQHIANIARKVNSEIVFFEE CCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCEEEECCHHHHHHHHHHCCCEEEEEC KRHLIPLMLKEMRVHQWVKNCLIFVPLLLGHRFDDLQAVLAACIAFASFSLCASSVYLLN CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DMLDLDVDRRHPRKHSRPFASGKLPLSLGIVLTIVLLGAGLGLAALLPWQFGAVLIAYMA HHHHCCCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH ATVAYSFVLKRIALIDVFTLAGLYTVRVIAGGECNNIPLSYWLILFSVPIFLSLAMLKRY HHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH VELEAMLQQGKTEAAGRGYLTQDMSILRSYGTAAGYLAVLVLALYLNSPEFKLLYHHPKM HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECHHH LWAVFGLTLYWVSRIWMLAFRGQMNDDPIVFTFKDRVSCSVIGLCGVFMLLAI HHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]