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The map label for this gene is rbsC [H]

Identifier: 186476994

GI number: 186476994

Start: 2516777

End: 2517790

Strand: Reverse

Name: rbsC [H]

Synonym: Bphy_2243

Alternate gene names: 186476994

Gene position: 2517790-2516777 (Counterclockwise)

Preceding gene: 186476995

Following gene: 186476993

Centisome position: 72.37

GC content: 60.26

Gene sequence:

>1014_bases
ATGCAACGGGCACACACTGACGCCGCGCCGGCAGGGCGCGCGATGCGGCTTGCGCATCGTCTGCACGGGCTGGGTCCGCT
TGCGGGCCTGGTCGTGCTGTGCATCGCGGGCACGCTGCTCAATCGCGATTTCGCCACCGTCGACAACATGATGAACGTGC
TCACGCGCACGTCGTTCATCGGGATCATTGCTGTCGGCATGACGTTCGTGATTATTTCGGGCGGCATCGATTTGTCGGTC
GGGTCGATGGCGGCGCTGATTGCGGGCAGCATGATCTGGTTGATGAATGCGCTTGCTGCCTCGCCGGGCGGGCATGCGTT
CGCGCCTTTGACGATTGTTCTGATCGGCATAGCCAGTGCCTTCGTGCTCGGTGGCGCGTTTGGGTGTGCGCATGGCTTGC
TCATCACCAAAGGGCGCATCGAGCCGTTCATCGTCACGTTGGGCACGTTGGGGATCTTTCGCGCGGTGCTGACGTGGCTG
GCCGATGGCGGCGCGTTGACGCTGGATAACAATCTTGCCGACCTGTACGGGCCTGTCTATTACGCGAGTCTGTTCGGCGT
GCCTGTGCCGATCTGGGTTTTTCTCTGTGTTGCTGCAGGCGGTGCGCTCATTCTCAATCGCACGGCGTTTGGTCGTCATG
TACAGGCGATCGGCTCGAACGAACAGGTCGCAAGATATGCCGCGATTCGCGTCGATACCGTCAAGATCGTGACGTATGTC
CTGCTTGGGGTTTGTGTCGGTGTGGCCACCGTGCTGTATGTGCCGAGGCTTGGATCTGCGACGCCTACTACGGGTCTGCT
CTGGGAGCTCGAAGCGATTGCCGCTGTCGTTGTGGGGGGCACCGCGCTCAAGGGCGGTGAGGGGCGGGTTGTCGGTACCG
TTATCGGTGCTGTGCTGCTCTCTGTGATCGCTAATATTCTTAATCTCACTAGCATCATTAGTGTTTATCTGAATGCTGCC
GTGCAGGGTGTGGTGATCATCGTTGTCGCGTTTTTGCAGCGTGGGCGGCGCTAG

Upstream 100 bases:

>100_bases
GAGCTGATCGGGCTATGCCATCGCGTCGCGGTGATGCGCGCGGGCCGCCTGCAGGCGACGCTCGGTCTCGGCCATCTGAC
CGAAGAGGAGTTGATCGCTC

Downstream 100 bases:

>100_bases
ACGCTTTTTGGTCTGCGACGCAGCCGCTGTTTGGGTTTTCGTGTTTTCGGTTCTGGCTGGCATCCGCGAGTGGGTAGTTC
ATGCGCGGCTCCCGTGCGGG

Product: monosaccharide-transporting ATPase

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 337; Mature: 337

Protein sequence:

>337_residues
MQRAHTDAAPAGRAMRLAHRLHGLGPLAGLVVLCIAGTLLNRDFATVDNMMNVLTRTSFIGIIAVGMTFVIISGGIDLSV
GSMAALIAGSMIWLMNALAASPGGHAFAPLTIVLIGIASAFVLGGAFGCAHGLLITKGRIEPFIVTLGTLGIFRAVLTWL
ADGGALTLDNNLADLYGPVYYASLFGVPVPIWVFLCVAAGGALILNRTAFGRHVQAIGSNEQVARYAAIRVDTVKIVTYV
LLGVCVGVATVLYVPRLGSATPTTGLLWELEAIAAVVVGGTALKGGEGRVVGTVIGAVLLSVIANILNLTSIISVYLNAA
VQGVVIIVVAFLQRGRR

Sequences:

>Translated_337_residues
MQRAHTDAAPAGRAMRLAHRLHGLGPLAGLVVLCIAGTLLNRDFATVDNMMNVLTRTSFIGIIAVGMTFVIISGGIDLSV
GSMAALIAGSMIWLMNALAASPGGHAFAPLTIVLIGIASAFVLGGAFGCAHGLLITKGRIEPFIVTLGTLGIFRAVLTWL
ADGGALTLDNNLADLYGPVYYASLFGVPVPIWVFLCVAAGGALILNRTAFGRHVQAIGSNEQVARYAAIRVDTVKIVTYV
LLGVCVGVATVLYVPRLGSATPTTGLLWELEAIAAVVVGGTALKGGEGRVVGTVIGAVLLSVIANILNLTSIISVYLNAA
VQGVVIIVVAFLQRGRR
>Mature_337_residues
MQRAHTDAAPAGRAMRLAHRLHGLGPLAGLVVLCIAGTLLNRDFATVDNMMNVLTRTSFIGIIAVGMTFVIISGGIDLSV
GSMAALIAGSMIWLMNALAASPGGHAFAPLTIVLIGIASAFVLGGAFGCAHGLLITKGRIEPFIVTLGTLGIFRAVLTWL
ADGGALTLDNNLADLYGPVYYASLFGVPVPIWVFLCVAAGGALILNRTAFGRHVQAIGSNEQVARYAAIRVDTVKIVTYV
LLGVCVGVATVLYVPRLGSATPTTGLLWELEAIAAVVVGGTALKGGEGRVVGTVIGAVLLSVIANILNLTSIISVYLNAA
VQGVVIIVVAFLQRGRR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=334, Percent_Identity=37.125748502994, Blast_Score=166, Evalue=2e-42,
Organism=Escherichia coli, GI145693152, Length=313, Percent_Identity=33.5463258785943, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI1790524, Length=301, Percent_Identity=31.5614617940199, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1788896, Length=324, Percent_Identity=32.0987654320988, Blast_Score=118, Evalue=7e-28,
Organism=Escherichia coli, GI87082395, Length=302, Percent_Identity=33.112582781457, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1787793, Length=292, Percent_Identity=31.1643835616438, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787794, Length=295, Percent_Identity=31.1864406779661, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1789992, Length=138, Percent_Identity=34.0579710144928, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693214, Length=252, Percent_Identity=31.7460317460317, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1788471, Length=229, Percent_Identity=29.2576419213974, Blast_Score=70, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34777; Mature: 34777

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRAHTDAAPAGRAMRLAHRLHGLGPLAGLVVLCIAGTLLNRDFATVDNMMNVLTRTSFI
CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
GIIAVGMTFVIISGGIDLSVGSMAALIAGSMIWLMNALAASPGGHAFAPLTIVLIGIASA
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
FVLGGAFGCAHGLLITKGRIEPFIVTLGTLGIFRAVLTWLADGGALTLDNNLADLYGPVY
HHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
YASLFGVPVPIWVFLCVAAGGALILNRTAFGRHVQAIGSNEQVARYAAIRVDTVKIVTYV
HHHHHCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LLGVCVGVATVLYVPRLGSATPTTGLLWELEAIAAVVVGGTALKGGEGRVVGTVIGAVLL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH
SVIANILNLTSIISVYLNAAVQGVVIIVVAFLQRGRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQRAHTDAAPAGRAMRLAHRLHGLGPLAGLVVLCIAGTLLNRDFATVDNMMNVLTRTSFI
CCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
GIIAVGMTFVIISGGIDLSVGSMAALIAGSMIWLMNALAASPGGHAFAPLTIVLIGIASA
HHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
FVLGGAFGCAHGLLITKGRIEPFIVTLGTLGIFRAVLTWLADGGALTLDNNLADLYGPVY
HHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHH
YASLFGVPVPIWVFLCVAAGGALILNRTAFGRHVQAIGSNEQVARYAAIRVDTVKIVTYV
HHHHHCCHHHHHHHHHHHCCCCEEEECHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
LLGVCVGVATVLYVPRLGSATPTTGLLWELEAIAAVVVGGTALKGGEGRVVGTVIGAVLL
HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHH
SVIANILNLTSIISVYLNAAVQGVVIIVVAFLQRGRR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]