| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476989
Identifier: 186476989
GI number: 186476989
Start: 2511416
End: 2512804
Strand: Reverse
Name: 186476989
Synonym: Bphy_2238
Alternate gene names: NA
Gene position: 2512804-2511416 (Counterclockwise)
Preceding gene: 186476991
Following gene: 186476986
Centisome position: 72.22
GC content: 67.24
Gene sequence:
>1389_bases ATGCCTTCACTCCAGGACGCGCTCGATGCGCTTGCCCATGCGCCCGACGACATCGAACGGTTGCGCGCCGTCTGCGTTGC ACTGCTCGAAGACATGCGCGACGACGAAGTGCTGCCGTACACCGAGCGTGCGCTCGCGATCGAGCCGCGCGATCTCCACT TCGTGGACTGGCACGCGCATGCGCTGACGCTGCTCGGCCGGCATTTCGATGCCGTCGCGACATGGCGCAAGCATGCCGCG CTGCCGTGGCGGCCTGCCTATTACAGGATGAGCCTCGGCCAGAGCCTCGTGATGTCCGGCGATACCGAGCGCGGCATTCC CATGCTGCACGGCGCGTGGCAGCAGGCCGCCGCCGATGGCGAATGGTTCGCGCAGAAGGCCGGGCATCTGTACGGCGAGG CCTTGCTGCGCACGTCGCGCCCGGCGGGCTTCGAGCAGTGGCTCGCCCGCAATTGCGGCGACACGGGCAGTTACCGGCCT GCCGGCATTCCCGTGTGGTCGGGCGAGCGCGATCTGCGCGGCAAGCGCGTGCTGATCGCACATCAGTTGGGTTTCGGCGA TCAGTGTCTGCTGTTCGCAGGCGTATCGCAGTGGCGCGCGGCGGGCGCCGAGTTGATGCTCACCTGCGATGTTCATCTGC ATCCGCTATTGCAGGCGTCGCTGCCCGGCTGCCGAGTCGTGAGCGCACCGCGTCCGTTGCGACGTGACGAGCCGTTGCCG GACGCCCTGGCGAACGAGGTACGCGCGTTCGCGCCCGATCTGTACGCAACGCTGCTGCATCTGCCGTTGCTGGCCGCGCA GCAGGCGTCGCTGCCGTCGCCGTTCTTCCCGGCGTATCTGCGCGCGCCCGAGGGCGAGCGCGAGACGGCTGCCGCATGGG CGCGGGATCTGCGCGCGGCGCAGCCGGGCAAATCGCTGATCGGCATTTTCTGGGACTGCAATCAGCGGCATGCGCATGAA GTTGGCGCGGTGATGCGCTGTTCGGCGATCCGGCGCAGTTTGCCGCTGACGGAAGTGAATCATCTCGTGACTCACCCGTC CGTGGCAGCGAAGCGGCATTTCGTGAGCCTGCATCATCCTGCTGCGCAGCGCTTCGCGGGGATGCCGTCGGGCAACATCA GCGTGTACGAGCCGGGTATCAGGACGTTCGCAGAAACGGCCGCGTGCATCGAGCAGATGGACGCCGTCGTCGCCGTCGAC TCGAGCGTCGCGAACCTGAGCGCGATGCTCGGCAAGCTGACCGTCGTGCCGCTGAATCTGACGAGCGAATGGCGCTGGGG CGTGGAAGGCGACCGCTCGCCGTGGATGGAGCATGTCAAGCTGCTGCGCCAGACGTTGATGGGCGACTGGCGCAACGTGA TCGACGAGGCGGTGGCGTTTCTGTCGTGA
Upstream 100 bases:
>100_bases GCTCATTGGCCGCTCATTGGCCGTTCACTGGCCGTTCAGCCCTCCCATCATGTCGCGCTGCGCCAGCAGCGTTGTGTAGA ACTTCGAAGCGATACTCGCC
Downstream 100 bases:
>100_bases GAACTGGGGCGGCAGACCGCGCCCCTTGCCAGACCGGACGGGCAGCGCTCACTGGCTGAGGTAAGTGAACTTCCCGCCCT TGATGACGCCCATTACGCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 462; Mature: 461
Protein sequence:
>462_residues MPSLQDALDALAHAPDDIERLRAVCVALLEDMRDDEVLPYTERALAIEPRDLHFVDWHAHALTLLGRHFDAVATWRKHAA LPWRPAYYRMSLGQSLVMSGDTERGIPMLHGAWQQAAADGEWFAQKAGHLYGEALLRTSRPAGFEQWLARNCGDTGSYRP AGIPVWSGERDLRGKRVLIAHQLGFGDQCLLFAGVSQWRAAGAELMLTCDVHLHPLLQASLPGCRVVSAPRPLRRDEPLP DALANEVRAFAPDLYATLLHLPLLAAQQASLPSPFFPAYLRAPEGERETAAAWARDLRAAQPGKSLIGIFWDCNQRHAHE VGAVMRCSAIRRSLPLTEVNHLVTHPSVAAKRHFVSLHHPAAQRFAGMPSGNISVYEPGIRTFAETAACIEQMDAVVAVD SSVANLSAMLGKLTVVPLNLTSEWRWGVEGDRSPWMEHVKLLRQTLMGDWRNVIDEAVAFLS
Sequences:
>Translated_462_residues MPSLQDALDALAHAPDDIERLRAVCVALLEDMRDDEVLPYTERALAIEPRDLHFVDWHAHALTLLGRHFDAVATWRKHAA LPWRPAYYRMSLGQSLVMSGDTERGIPMLHGAWQQAAADGEWFAQKAGHLYGEALLRTSRPAGFEQWLARNCGDTGSYRP AGIPVWSGERDLRGKRVLIAHQLGFGDQCLLFAGVSQWRAAGAELMLTCDVHLHPLLQASLPGCRVVSAPRPLRRDEPLP DALANEVRAFAPDLYATLLHLPLLAAQQASLPSPFFPAYLRAPEGERETAAAWARDLRAAQPGKSLIGIFWDCNQRHAHE VGAVMRCSAIRRSLPLTEVNHLVTHPSVAAKRHFVSLHHPAAQRFAGMPSGNISVYEPGIRTFAETAACIEQMDAVVAVD SSVANLSAMLGKLTVVPLNLTSEWRWGVEGDRSPWMEHVKLLRQTLMGDWRNVIDEAVAFLS >Mature_461_residues PSLQDALDALAHAPDDIERLRAVCVALLEDMRDDEVLPYTERALAIEPRDLHFVDWHAHALTLLGRHFDAVATWRKHAAL PWRPAYYRMSLGQSLVMSGDTERGIPMLHGAWQQAAADGEWFAQKAGHLYGEALLRTSRPAGFEQWLARNCGDTGSYRPA GIPVWSGERDLRGKRVLIAHQLGFGDQCLLFAGVSQWRAAGAELMLTCDVHLHPLLQASLPGCRVVSAPRPLRRDEPLPD ALANEVRAFAPDLYATLLHLPLLAAQQASLPSPFFPAYLRAPEGERETAAAWARDLRAAQPGKSLIGIFWDCNQRHAHEV GAVMRCSAIRRSLPLTEVNHLVTHPSVAAKRHFVSLHHPAAQRFAGMPSGNISVYEPGIRTFAETAACIEQMDAVVAVDS SVANLSAMLGKLTVVPLNLTSEWRWGVEGDRSPWMEHVKLLRQTLMGDWRNVIDEAVAFLS
Specific function: Unknown
COG id: COG0457
COG function: function code R; FOG: TPR repeat
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51099; Mature: 50968
Theoretical pI: Translated: 6.85; Mature: 6.85
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSLQDALDALAHAPDDIERLRAVCVALLEDMRDDEVLPYTERALAIEPRDLHFVDWHAH CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEHHHH ALTLLGRHFDAVATWRKHAALPWRPAYYRMSLGQSLVMSGDTERGIPMLHGAWQQAAADG HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHEECCCCCCCCCHHHHHHHHHCCCH EWFAQKAGHLYGEALLRTSRPAGFEQWLARNCGDTGSYRPAGIPVWSGERDLRGKRVLIA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE HQLGFGDQCLLFAGVSQWRAAGAELMLTCDVHLHPLLQASLPGCRVVSAPRPLRRDEPLP EECCCCCCCHHHHCHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEECCCCCCCCCCCCH DALANEVRAFAPDLYATLLHLPLLAAQQASLPSPFFPAYLRAPEGERETAAAWARDLRAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHC QPGKSLIGIFWDCNQRHAHEVGAVMRCSAIRRSLPLTEVNHLVTHPSVAAKRHFVSLHHP CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCH AAQRFAGMPSGNISVYEPGIRTFAETAACIEQMDAVVAVDSSVANLSAMLGKLTVVPLNL HHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCEEEEEEEC TSEWRWGVEGDRSPWMEHVKLLRQTLMGDWRNVIDEAVAFLS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PSLQDALDALAHAPDDIERLRAVCVALLEDMRDDEVLPYTERALAIEPRDLHFVDWHAH CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCEEEEHHHH ALTLLGRHFDAVATWRKHAALPWRPAYYRMSLGQSLVMSGDTERGIPMLHGAWQQAAADG HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHEECCCCCCCCCHHHHHHHHHCCCH EWFAQKAGHLYGEALLRTSRPAGFEQWLARNCGDTGSYRPAGIPVWSGERDLRGKRVLIA HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEE HQLGFGDQCLLFAGVSQWRAAGAELMLTCDVHLHPLLQASLPGCRVVSAPRPLRRDEPLP EECCCCCCCHHHHCHHHHHHCCCEEEEEECCHHHHHHHHCCCCCEEECCCCCCCCCCCCH DALANEVRAFAPDLYATLLHLPLLAAQQASLPSPFFPAYLRAPEGERETAAAWARDLRAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHC QPGKSLIGIFWDCNQRHAHEVGAVMRCSAIRRSLPLTEVNHLVTHPSVAAKRHFVSLHHP CCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCH AAQRFAGMPSGNISVYEPGIRTFAETAACIEQMDAVVAVDSSVANLSAMLGKLTVVPLNL HHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHCEEEEEEEC TSEWRWGVEGDRSPWMEHVKLLRQTLMGDWRNVIDEAVAFLS CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA