| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is proW [C]
Identifier: 186476907
GI number: 186476907
Start: 2416423
End: 2418177
Strand: Reverse
Name: proW [C]
Synonym: Bphy_2156
Alternate gene names: 186476907
Gene position: 2418177-2416423 (Counterclockwise)
Preceding gene: 186476910
Following gene: 186476906
Centisome position: 69.5
GC content: 63.99
Gene sequence:
>1755_bases ATGGATCTGTTCAGCTTCACCCTGAACCGCACCGCCAACGCGTCCGCCTGGCGGGTGCTGCCCAATCGCTGGGACTTCAT TGCGTTCCCGCTGATCATCTGTCTGATCGCGATGGCCGTCGTCGGCTTCCACGAAACGATGGCGCCCATCTCGACTTTGC AGAACGCGCCGATCTCGCTCGATCCGGCCAATCTGCCCGAGTATGCGCTGCGCACCACGCTGCGCATGCTCGCTGCGATG GTGGCGTCGCTGGTGTTCACGCTCGTCTACGGCACGCTGGCGGCCAAGAGCCGCCGCGCGGGCCAGGTGCTCGTGCCGAT TCTCGACATCCTGCAATCGGTGCCCGTGCTCGGCTACATCTCGTTCACGGTGACGTTCTTCCTCGCGCTCTTTCCGTCTC GCGTGCTGGGCGCCGAACTGGCCGCGATCTTCGCGATCTTCACCAGCCAGGCGTGGAACATGACCTTCAGCTTCTACCAG TCGCTGCGCACGGTGCCGCGCGATCTGGACGAAGTGTCGAAGGGCTTCCATCTGACGTCGTGGCAGCGCTTCTGGAAGCT CGAAGTGCCGTTCTCGATGCCCGGCCTCATCTGGAACATGATGATGTCGATGTCGGGCGGCTGGTTCTTCGTGGTGGCGT CCGAAGCGATCACCGTCGGTAACCATACGATCACGCTGCCTGGCATGGGCTCGTATCTGGCGCAGGCCATCGCCGAAAAA AACCTGCACGCAATCGGCTGGGTGATCCTGACAATGACGGTGGTGATTCTCGCGTACGACCAGTTCCTGTTCCGTCCGCT CGTCGCGTGGACCGACAAGTTCCGCATGGAGAACACGAGTTCCGGCGACGCGCCCGAGTCGTGGCTGCTCGACCTGATCC GCCGCACGCGCCTGATTCACCGGCTGCTCGTGCCGATCGGCTGGATGTTCGCGAAGGCGGCGCGTGTGCCTATCCGCTGG CCGCGCGTCGGTCCGGTGCGCTTCGCGAAGCCGGTCGAGCACAAGCCGTCGAAGACGGGCGACATCGTCTGGTCCGTGAT CGTCATGCTGGTGACGGCGTTCGTCGTGTACCGCGTGGTCGCGTATGTGCGTACGGGAGTCACGCTCGATGAAGTCGGCC ATGTGTTCGTCCTCGGCCTGCTGACGCTGCTGCGCGTGACGTTGCTGATTGCGCTGGCTTCCGTGGTGTGGCTGCCCGTG GGCGTACTGATCGGTCTGCGTCCGGCGCTCGCCGAGAAGGTCCAGCCGCTCGCGCAGTTTCTCGCCGCGTTCCCCGCAAA CCTGCTGTTCCCGGCGTTCGTGCTCGTGATCGTGAGGTTCGATCTGAACCCGGACATCTGGCTTTCGCCGCTGATCGTGC TCGGCACGCAGTGGTATATCCTGTTCAACGTGATTGCGGGCGCGAGCGCCTATCCGAACGACTACAAGGAAGCCGCGAAG AACTTCCGCATCCGCGGCTGGCAATGGTGGCGTCAGGCGATGCTGCCGGGCGTGTTCCCGTACTACGTGACGGGAGCGAT CACGGCCTCGGGCGGCGCGTGGAATGCGAGCATCGTCGCGGAGGCGGTGCAGTGGGGCGATACCAAGGTCGCTGCGCACG GCCTCGGCGCGTATATCGCGCAGTACACGGCGGCGGGCGACTATCCGAAAATCATTCTGGGCATCGCGGTGATGTCCCTG TTCGTGTCCCTCTTCAATCGCGTGTTGTGGCGCCCTCTGTACGCCTACGCCGAAAGCCGCCTGCGGCTCGATTGA
Upstream 100 bases:
>100_bases GAACCCCGGACCGTCGCGCCGCCGCGACCCATGACGGCGCGGGCGTAGCCGTCATGGCTTGCTGCATGGCCGCGTGTCGC CGCAAACAGAGGGGCGTCTG
Downstream 100 bases:
>100_bases GATTCATTGAAGGCATAACGCGATGCAACATCCAAAGACCGTAACGGCCGCCACGCCAGTCCAGACGCCGCCGATGCCAC CGCGCCTCGGCGACGAAATC
Product: binding-protein-dependent transport systems inner membrane component
Products: ADP; phosphate; L-proline [Cytoplasm] [C]
Alternate protein names: ABC Transporter Permease; ABC Transporter Membrane Protein; ABC Transporter Nitrate Permease; ABC Transporter; ABC Anion Transporter; ABC-Type Anion Transport System Permease Component; Anion Transporter Permease Protein; Nitrate ABC Transporter Permease; ABC Transporter Inner Membrane Subunit; ABC Transporter Transmembrane Permease Protein; ABC-Type Anion Transport System; ABC-Type Nitrate Transport Permease; ABC Transport System Permease Protein; Transmembrane ABC Transporter Protein; Nitrate Transport System Permease Protein; Nitrate ABC Transporter Permease Protein; Anion ABC Transporter Permease; Taurine ABC Transporter Permease Protein; Sugar ABC Transporter; Sugar ABC Transporter 1 Permease Protein; Sulfonate Transport Permease Protein; Nitrate Transport System Permease
Number of amino acids: Translated: 584; Mature: 584
Protein sequence:
>584_residues MDLFSFTLNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPISTLQNAPISLDPANLPEYALRTTLRMLAAM VASLVFTLVYGTLAAKSRRAGQVLVPILDILQSVPVLGYISFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQ SLRTVPRDLDEVSKGFHLTSWQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNHTITLPGMGSYLAQAIAEK NLHAIGWVILTMTVVILAYDQFLFRPLVAWTDKFRMENTSSGDAPESWLLDLIRRTRLIHRLLVPIGWMFAKAARVPIRW PRVGPVRFAKPVEHKPSKTGDIVWSVIVMLVTAFVVYRVVAYVRTGVTLDEVGHVFVLGLLTLLRVTLLIALASVVWLPV GVLIGLRPALAEKVQPLAQFLAAFPANLLFPAFVLVIVRFDLNPDIWLSPLIVLGTQWYILFNVIAGASAYPNDYKEAAK NFRIRGWQWWRQAMLPGVFPYYVTGAITASGGAWNASIVAEAVQWGDTKVAAHGLGAYIAQYTAAGDYPKIILGIAVMSL FVSLFNRVLWRPLYAYAESRLRLD
Sequences:
>Translated_584_residues MDLFSFTLNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPISTLQNAPISLDPANLPEYALRTTLRMLAAM VASLVFTLVYGTLAAKSRRAGQVLVPILDILQSVPVLGYISFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQ SLRTVPRDLDEVSKGFHLTSWQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNHTITLPGMGSYLAQAIAEK NLHAIGWVILTMTVVILAYDQFLFRPLVAWTDKFRMENTSSGDAPESWLLDLIRRTRLIHRLLVPIGWMFAKAARVPIRW PRVGPVRFAKPVEHKPSKTGDIVWSVIVMLVTAFVVYRVVAYVRTGVTLDEVGHVFVLGLLTLLRVTLLIALASVVWLPV GVLIGLRPALAEKVQPLAQFLAAFPANLLFPAFVLVIVRFDLNPDIWLSPLIVLGTQWYILFNVIAGASAYPNDYKEAAK NFRIRGWQWWRQAMLPGVFPYYVTGAITASGGAWNASIVAEAVQWGDTKVAAHGLGAYIAQYTAAGDYPKIILGIAVMSL FVSLFNRVLWRPLYAYAESRLRLD >Mature_584_residues MDLFSFTLNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPISTLQNAPISLDPANLPEYALRTTLRMLAAM VASLVFTLVYGTLAAKSRRAGQVLVPILDILQSVPVLGYISFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQ SLRTVPRDLDEVSKGFHLTSWQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNHTITLPGMGSYLAQAIAEK NLHAIGWVILTMTVVILAYDQFLFRPLVAWTDKFRMENTSSGDAPESWLLDLIRRTRLIHRLLVPIGWMFAKAARVPIRW PRVGPVRFAKPVEHKPSKTGDIVWSVIVMLVTAFVVYRVVAYVRTGVTLDEVGHVFVLGLLTLLRVTLLIALASVVWLPV GVLIGLRPALAEKVQPLAQFLAAFPANLLFPAFVLVIVRFDLNPDIWLSPLIVLGTQWYILFNVIAGASAYPNDYKEAAK NFRIRGWQWWRQAMLPGVFPYYVTGAITASGGAWNASIVAEAVQWGDTKVAAHGLGAYIAQYTAAGDYPKIILGIAVMSL FVSLFNRVLWRPLYAYAESRLRLD
Specific function: Involved In A Multicomponent Binding-Protein-Dependent Transport System For Glycine Betaine/L-Proline. [C]
COG id: COG4986
COG function: function code P; ABC-type anion transport system, duplicated permease component
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65171; Mature: 65171
Theoretical pI: Translated: 10.14; Mature: 10.14
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLFSFTLNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPISTLQNAPISL CCCHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DPANLPEYALRTTLRMLAAMVASLVFTLVYGTLAAKSRRAGQVLVPILDILQSVPVLGYI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHH SFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQSLRTVPRDLDEVSKGFHLTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC WQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNHTITLPGMGSYLAQAIAEK HHHHEEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCEEEECCCCHHHHHHHHHHC NLHAIGWVILTMTVVILAYDQFLFRPLVAWTDKFRMENTSSGDAPESWLLDLIRRTRLIH CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH RLLVPIGWMFAKAARVPIRWPRVGPVRFAKPVEHKPSKTGDIVWSVIVMLVTAFVVYRVV HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AYVRTGVTLDEVGHVFVLGLLTLLRVTLLIALASVVWLPVGVLIGLRPALAEKVQPLAQF HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LAAFPANLLFPAFVLVIVRFDLNPDIWLSPLIVLGTQWYILFNVIAGASAYPNDYKEAAK HHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH NFRIRGWQWWRQAMLPGVFPYYVTGAITASGGAWNASIVAEAVQWGDTKVAAHGLGAYIA CCCCCHHHHHHHHHCCCCCHHHHHHEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH QYTAAGDYPKIILGIAVMSLFVSLFNRVLWRPLYAYAESRLRLD HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDLFSFTLNRTANASAWRVLPNRWDFIAFPLIICLIAMAVVGFHETMAPISTLQNAPISL CCCHHHHHCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC DPANLPEYALRTTLRMLAAMVASLVFTLVYGTLAAKSRRAGQVLVPILDILQSVPVLGYI CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHH SFTVTFFLALFPSRVLGAELAAIFAIFTSQAWNMTFSFYQSLRTVPRDLDEVSKGFHLTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC WQRFWKLEVPFSMPGLIWNMMMSMSGGWFFVVASEAITVGNHTITLPGMGSYLAQAIAEK HHHHEEEECCCCCHHHHHHHHHHCCCCEEEEEECCEEEECCEEEECCCCHHHHHHHHHHC NLHAIGWVILTMTVVILAYDQFLFRPLVAWTDKFRMENTSSGDAPESWLLDLIRRTRLIH CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHH RLLVPIGWMFAKAARVPIRWPRVGPVRFAKPVEHKPSKTGDIVWSVIVMLVTAFVVYRVV HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH AYVRTGVTLDEVGHVFVLGLLTLLRVTLLIALASVVWLPVGVLIGLRPALAEKVQPLAQF HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH LAAFPANLLFPAFVLVIVRFDLNPDIWLSPLIVLGTQWYILFNVIAGASAYPNDYKEAAK HHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHH NFRIRGWQWWRQAMLPGVFPYYVTGAITASGGAWNASIVAEAVQWGDTKVAAHGLGAYIA CCCCCHHHHHHHHHCCCCCHHHHHHEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH QYTAAGDYPKIILGIAVMSLFVSLFNRVLWRPLYAYAESRLRLD HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-proline [Periplasm]; H2O [C]
Specific reaction: ATP + L-proline [Periplasm] + H2O = ADP + phosphate + L-proline [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA