| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476733
Identifier: 186476733
GI number: 186476733
Start: 2229191
End: 2230357
Strand: Reverse
Name: 186476733
Synonym: Bphy_1978
Alternate gene names: NA
Gene position: 2230357-2229191 (Counterclockwise)
Preceding gene: 186476734
Following gene: 186476728
Centisome position: 64.11
GC content: 61.7
Gene sequence:
>1167_bases ATGACGCTATCCATTACGAGCAACTTCGACGCCGGCGCGATCGAAGTCCTGTCCTGCGCGCAGGCCGACAACATCCGTTT GCGCGTGCGTCCGGACAGCCACGCGGACTTCGCGCAGTGGTTCTACTTCCGGCTGTCGGGTGGCCGAGGCGAGCGCTGCG TCATGACCTTCGAGAACGCTGCCGACTGCGCATTCGCCGAAGGCTGGCGCGACTATCACGCCTGCGCGAGCTATGACCGT GTGAACTGGTTCCGCGTGCCGACCTCGTACGACGGCCGCGTGCTGACCATCGATCACACGCCCGATTTCGACCGCGTCTA CTACGCGTACTTCGAGCCATATAGCGAAGAGCGCCACTCGGAATTTCTCGGCGCAGTCCAACAGATGCCGCATGCTGCGC TGACGGAACTAGGCAAGACGGTCGAAGGCCGGCCGATGTCGGTGTTGACCCTCGGCACGCCGACGCTGCGCGACGACGGT ACGCTGAAGCCGAAGAAGAAAATCTGGATCATCGCGCGTCAACATCCCGGCGAGACGATGGCTGAGTGGTTCGTAGAAGG GCTGGTGAAGCGGCTGGTGGGCTGGGGCGATTGGTCGGGCGATCCCGTTGCGCGCAGGCTCTACGATTACGCGGACTTCC ACATCGTACCGAACATGAACCCGGACGGCAGCGTGCACGGCAATCTGCGCACGAATGCAGCGGGCGCGAATCTGAATCGA GAATGGATGGAGCCGGATGCCGCACGTAGTCCTGAAGTGCTGCTCGTGCGCGACGCGATCCATGCGACGGGCTGCGATCT GTTTTTCGACATTCATGGCGACGAAGCGCTGCCGTATGTGTTCGTTGCGGGCTCGGAGATGCTACCGAGCTTCACCGAGC GGCAACGCGAGGAACAGACGGCGTTCATTGAGGGCTTCAAGCGCGCGAGTCCAGATTTCCAGGATAAGTACGGTTACGAA TCGAGCAAGTATCGGCAAGATGCGCTCAAGCTGGCGTCGAAGTATATCGGCAACGAGTTCGGTTGCCTGTCGCTGACGCT GGAGATGCCGTTCAAGGACAATGCAAATCTGCCCGACGAACGCATCGGCTGGAATGGCGAGCGCAGCGCGGCGCTCGGCG CGGCGATGCTGCAGGCTATCCTCTGGCATATGGAGGCCTTCGCCTGA
Upstream 100 bases:
>100_bases AAGGCTATGCATTCGACGCTCAGGCCTCGAACGACTCCACCTATGTCTTTCGTCGGCGCGTCGCAGACTGACGCCGCGCC GAACCAGCAGGAACATCAAC
Downstream 100 bases:
>100_bases GGCGCGTGTTGTGTCGACACGTTGACCAGTCGTCAAGGTATGCGAAAAAGCGAGGCCACGTGGAATGCGTGGCCTCGTTT TGTTGATCATGCGCTGTGCC
Product: peptidase M14 carboxypeptidase A
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 388; Mature: 387
Protein sequence:
>388_residues MTLSITSNFDAGAIEVLSCAQADNIRLRVRPDSHADFAQWFYFRLSGGRGERCVMTFENAADCAFAEGWRDYHACASYDR VNWFRVPTSYDGRVLTIDHTPDFDRVYYAYFEPYSEERHSEFLGAVQQMPHAALTELGKTVEGRPMSVLTLGTPTLRDDG TLKPKKKIWIIARQHPGETMAEWFVEGLVKRLVGWGDWSGDPVARRLYDYADFHIVPNMNPDGSVHGNLRTNAAGANLNR EWMEPDAARSPEVLLVRDAIHATGCDLFFDIHGDEALPYVFVAGSEMLPSFTERQREEQTAFIEGFKRASPDFQDKYGYE SSKYRQDALKLASKYIGNEFGCLSLTLEMPFKDNANLPDERIGWNGERSAALGAAMLQAILWHMEAFA
Sequences:
>Translated_388_residues MTLSITSNFDAGAIEVLSCAQADNIRLRVRPDSHADFAQWFYFRLSGGRGERCVMTFENAADCAFAEGWRDYHACASYDR VNWFRVPTSYDGRVLTIDHTPDFDRVYYAYFEPYSEERHSEFLGAVQQMPHAALTELGKTVEGRPMSVLTLGTPTLRDDG TLKPKKKIWIIARQHPGETMAEWFVEGLVKRLVGWGDWSGDPVARRLYDYADFHIVPNMNPDGSVHGNLRTNAAGANLNR EWMEPDAARSPEVLLVRDAIHATGCDLFFDIHGDEALPYVFVAGSEMLPSFTERQREEQTAFIEGFKRASPDFQDKYGYE SSKYRQDALKLASKYIGNEFGCLSLTLEMPFKDNANLPDERIGWNGERSAALGAAMLQAILWHMEAFA >Mature_387_residues TLSITSNFDAGAIEVLSCAQADNIRLRVRPDSHADFAQWFYFRLSGGRGERCVMTFENAADCAFAEGWRDYHACASYDRV NWFRVPTSYDGRVLTIDHTPDFDRVYYAYFEPYSEERHSEFLGAVQQMPHAALTELGKTVEGRPMSVLTLGTPTLRDDGT LKPKKKIWIIARQHPGETMAEWFVEGLVKRLVGWGDWSGDPVARRLYDYADFHIVPNMNPDGSVHGNLRTNAAGANLNRE WMEPDAARSPEVLLVRDAIHATGCDLFFDIHGDEALPYVFVAGSEMLPSFTERQREEQTAFIEGFKRASPDFQDKYGYES SKYRQDALKLASKYIGNEFGCLSLTLEMPFKDNANLPDERIGWNGERSAALGAAMLQAILWHMEAFA
Specific function: Unknown
COG id: COG2866
COG function: function code E; Predicted carboxypeptidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI190194403, Length=372, Percent_Identity=26.6129032258064, Blast_Score=106, Evalue=3e-23, Organism=Homo sapiens, GI222352158, Length=315, Percent_Identity=25.3968253968254, Blast_Score=100, Evalue=2e-21, Organism=Homo sapiens, GI120444924, Length=207, Percent_Identity=29.951690821256, Blast_Score=87, Evalue=2e-17, Organism=Homo sapiens, GI31657119, Length=313, Percent_Identity=24.6006389776358, Blast_Score=83, Evalue=5e-16, Organism=Homo sapiens, GI170763513, Length=333, Percent_Identity=23.1231231231231, Blast_Score=78, Evalue=1e-14, Organism=Caenorhabditis elegans, GI115533904, Length=410, Percent_Identity=24.6341463414634, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI193202888, Length=329, Percent_Identity=26.7477203647416, Blast_Score=89, Evalue=4e-18, Organism=Drosophila melanogaster, GI24641847, Length=362, Percent_Identity=25.6906077348066, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI28571179, Length=362, Percent_Identity=25.6906077348066, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI161077807, Length=362, Percent_Identity=25.6906077348066, Blast_Score=99, Evalue=4e-21, Organism=Drosophila melanogaster, GI24641845, Length=362, Percent_Identity=25.6906077348066, Blast_Score=99, Evalue=5e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000834 [H]
Pfam domain/function: PF00246 Peptidase_M14 [H]
EC number: NA
Molecular weight: Translated: 43902; Mature: 43770
Theoretical pI: Translated: 4.99; Mature: 4.99
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLSITSNFDAGAIEVLSCAQADNIRLRVRPDSHADFAQWFYFRLSGGRGERCVMTFENA CEEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHEEEEEEECCCCCCEEEEEECCC ADCAFAEGWRDYHACASYDRVNWFRVPTSYDGRVLTIDHTPDFDRVYYAYFEPYSEERHS CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHH EFLGAVQQMPHAALTELGKTVEGRPMSVLTLGTPTLRDDGTLKPKKKIWIIARQHPGETM HHHHHHHHCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHH AEWFVEGLVKRLVGWGDWSGDPVARRLYDYADFHIVPNMNPDGSVHGNLRTNAAGANLNR HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCEEEECCCCCCCCEECCEECCCCCCCCCH EWMEPDAARSPEVLLVRDAIHATGCDLFFDIHGDEALPYVFVAGSEMLPSFTERQREEQT HHCCCCCCCCCCEEEEECCHHHCCCEEEEEECCCCCCCEEEEECCHHCCHHHHHHHHHHH AFIEGFKRASPDFQDKYGYESSKYRQDALKLASKYIGNEFGCLSLTLEMPFKDNANLPDE HHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHH RIGWNGERSAALGAAMLQAILWHMEAFA HCCCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure TLSITSNFDAGAIEVLSCAQADNIRLRVRPDSHADFAQWFYFRLSGGRGERCVMTFENA EEEEECCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHEEEEEEECCCCCCEEEEEECCC ADCAFAEGWRDYHACASYDRVNWFRVPTSYDGRVLTIDHTPDFDRVYYAYFEPYSEERHS CCCHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHH EFLGAVQQMPHAALTELGKTVEGRPMSVLTLGTPTLRDDGTLKPKKKIWIIARQHPGETM HHHHHHHHCCHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCHHH AEWFVEGLVKRLVGWGDWSGDPVARRLYDYADFHIVPNMNPDGSVHGNLRTNAAGANLNR HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCEEEECCCCCCCCEECCEECCCCCCCCCH EWMEPDAARSPEVLLVRDAIHATGCDLFFDIHGDEALPYVFVAGSEMLPSFTERQREEQT HHCCCCCCCCCCEEEEECCHHHCCCEEEEEECCCCCCCEEEEECCHHCCHHHHHHHHHHH AFIEGFKRASPDFQDKYGYESSKYRQDALKLASKYIGNEFGCLSLTLEMPFKDNANLPDE HHHHHHHHCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCHH RIGWNGERSAALGAAMLQAILWHMEAFA HCCCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8320209 [H]