| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476686
Identifier: 186476686
GI number: 186476686
Start: 2173403
End: 2174776
Strand: Reverse
Name: 186476686
Synonym: Bphy_1931
Alternate gene names: NA
Gene position: 2174776-2173403 (Counterclockwise)
Preceding gene: 186476687
Following gene: 186476685
Centisome position: 62.51
GC content: 49.85
Gene sequence:
>1374_bases ATGGCTCATCCGCATCACACACAGCATCCGGCAGGGCCTAAGGCTCCGCCGTCACCCTACGTCGAAGTGACTTTCCTGTT TAGGGATACGCTGCAAAAACCAATTGAAGGGCTCACCGTTCAGATTAAGGCGGGTGCGGGCGCTCCGCAAGCGCCCGCAT GGAAACTTGGACCAGACGGTGATGATCCGCCTGCTACAGATCCGGCGTCGGCCCCCGCAGCGAATCCTTCCGTGCCGATG GTGGATAACAAGGCAGATGCGCTAGTAACGGACAAGGACGGCTACGCCCTGACGATCCAGAACGCTGCGCGCAACCAGCC GATTGATGTGCTGGTGAAGAACCAACGTGGCGAGTACGTGTGGAAGGCGACCGTGACGCCGAAAAAGGACATCAGCGCAT TCACGATTGTCAGTCCAGAGTACCACCTGGAAGCGACGACGAAGCTGACGCCCACAGAAGAGTTGCAGCAGAACCTCGAC CTACCGGTTGTTCAGCAAGGCGAGGTTATGACCATTGCGCGTCTGGTTCACGACTTCGGGCCGTATATTGGCTGGTCGCA GAAAGTTACCGAGCAGGGTCGCGTGAAGAAGGATTTTCCCGAGAAAAAGAAGGACGTGACGGAAGATCCTGTAACCCATA AAAAGAAAACGAAGATTACCATTGAACACCATTACAAAGTTGTCGATACCGGCAAGCCTCAAACGGTCGCGCTCAATGTG CTTGGGTCCAGGCTTAGTTATCCGAAATCAATACTATTGACGGATGACCACTTCAGTTATTTGGCAAATTCGCTTGGCTG TGAGGCCGCAGCTATTAAGGCGCTATCAAAACAGGAAACTGTCGGCAAAGGGATGTGGCAGCCGGATCATGGATTTGATA AAAATGGCTTGCCACGAATTCTATATGAGCGGCATAAATTTTACGCTTATACTATGCCTGATACGAATAAAAATAGTAAA AATAAACCAGTAAGCCCCTACGCAAAAAAATATCCGGACATCTGTAATCCGGCATCAGGTGGATTCGGAAAGGAGGGGTT GCATCAATACGAAAGATTCTGCCGTGCGGCAAGCTTGGATATGGAAGCCGCTGCTAAGTCGAGTTCGTGGGGCGCGTTTC AAATACTTGGTGAAGCTTACGATGGATGTGGATTTTCTTCTGCTGTGGATTTTGCAAACCAGCACATGAAAGGAATAGAT GAGCAGGTAAAAGTTTTTGAGGCTTTCATGAAGAATGTGAAACCACAAGCTGTTAAGGCTTTAAAGGACAAGAAGTGGGA AGATGTTGCAACTTATTACAACGGCGGGAACTGGCGCAAGAAGAATCCAGACTATGCAAAGAATTTAGGGGATTTCTATG CGTCGTTTAAATGA
Upstream 100 bases:
>100_bases GGCGTGGTCGAAGACGCTTACGACCACCACGAACTGGAAGATGACTCCGCGCAGGCTTGAAACGGGCTTGCTCTTTAAAA TGATTTGTGAAAGGTAATTG
Downstream 100 bases:
>100_bases ATTCATTACCATGATTGTCGCCGCTTTGTCATTTTCGGGTGCGACTAATGCCGCTGATCTGTTGATTTTTGATTCTCCAA ATATGATTATGTTAAAAGAT
Product: hypothetical protein
Products: NA
Alternate protein names: Phage-Related Cell Wall Hydrolase; Bacteriophage-Acquired Protein; DNA-Directed RNA Polymerase Beta Chain; Lytic Phage PhiCTX_orf; Gp43 Bacteriophage-Acquired Protein; LysM Domain Protein
Number of amino acids: Translated: 457; Mature: 456
Protein sequence:
>457_residues MAHPHHTQHPAGPKAPPSPYVEVTFLFRDTLQKPIEGLTVQIKAGAGAPQAPAWKLGPDGDDPPATDPASAPAANPSVPM VDNKADALVTDKDGYALTIQNAARNQPIDVLVKNQRGEYVWKATVTPKKDISAFTIVSPEYHLEATTKLTPTEELQQNLD LPVVQQGEVMTIARLVHDFGPYIGWSQKVTEQGRVKKDFPEKKKDVTEDPVTHKKKTKITIEHHYKVVDTGKPQTVALNV LGSRLSYPKSILLTDDHFSYLANSLGCEAAAIKALSKQETVGKGMWQPDHGFDKNGLPRILYERHKFYAYTMPDTNKNSK NKPVSPYAKKYPDICNPASGGFGKEGLHQYERFCRAASLDMEAAAKSSSWGAFQILGEAYDGCGFSSAVDFANQHMKGID EQVKVFEAFMKNVKPQAVKALKDKKWEDVATYYNGGNWRKKNPDYAKNLGDFYASFK
Sequences:
>Translated_457_residues MAHPHHTQHPAGPKAPPSPYVEVTFLFRDTLQKPIEGLTVQIKAGAGAPQAPAWKLGPDGDDPPATDPASAPAANPSVPM VDNKADALVTDKDGYALTIQNAARNQPIDVLVKNQRGEYVWKATVTPKKDISAFTIVSPEYHLEATTKLTPTEELQQNLD LPVVQQGEVMTIARLVHDFGPYIGWSQKVTEQGRVKKDFPEKKKDVTEDPVTHKKKTKITIEHHYKVVDTGKPQTVALNV LGSRLSYPKSILLTDDHFSYLANSLGCEAAAIKALSKQETVGKGMWQPDHGFDKNGLPRILYERHKFYAYTMPDTNKNSK NKPVSPYAKKYPDICNPASGGFGKEGLHQYERFCRAASLDMEAAAKSSSWGAFQILGEAYDGCGFSSAVDFANQHMKGID EQVKVFEAFMKNVKPQAVKALKDKKWEDVATYYNGGNWRKKNPDYAKNLGDFYASFK >Mature_456_residues AHPHHTQHPAGPKAPPSPYVEVTFLFRDTLQKPIEGLTVQIKAGAGAPQAPAWKLGPDGDDPPATDPASAPAANPSVPMV DNKADALVTDKDGYALTIQNAARNQPIDVLVKNQRGEYVWKATVTPKKDISAFTIVSPEYHLEATTKLTPTEELQQNLDL PVVQQGEVMTIARLVHDFGPYIGWSQKVTEQGRVKKDFPEKKKDVTEDPVTHKKKTKITIEHHYKVVDTGKPQTVALNVL GSRLSYPKSILLTDDHFSYLANSLGCEAAAIKALSKQETVGKGMWQPDHGFDKNGLPRILYERHKFYAYTMPDTNKNSKN KPVSPYAKKYPDICNPASGGFGKEGLHQYERFCRAASLDMEAAAKSSSWGAFQILGEAYDGCGFSSAVDFANQHMKGIDE QVKVFEAFMKNVKPQAVKALKDKKWEDVATYYNGGNWRKKNPDYAKNLGDFYASFK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 50579; Mature: 50447
Theoretical pI: Translated: 9.02; Mature: 9.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAHPHHTQHPAGPKAPPSPYVEVTFLFRDTLQKPIEGLTVQIKAGAGAPQAPAWKLGPDG CCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCC DDPPATDPASAPAANPSVPMVDNKADALVTDKDGYALTIQNAARNQPIDVLVKNQRGEYV CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCCEE WKATVTPKKDISAFTIVSPEYHLEATTKLTPTEELQQNLDLPVVQQGEVMTIARLVHDFG EEEECCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHCCCCCEECCCCHHHHHHHHHHHC PYIGWSQKVTEQGRVKKDFPEKKKDVTEDPVTHKKKTKITIEHHYKVVDTGKPQTVALNV CCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEE LGSRLSYPKSILLTDDHFSYLANSLGCEAAAIKALSKQETVGKGMWQPDHGFDKNGLPRI HHHHHCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH LYERHKFYAYTMPDTNKNSKNKPVSPYAKKYPDICNPASGGFGKEGLHQYERFCRAASLD HHHCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC MEAAAKSSSWGAFQILGEAYDGCGFSSAVDFANQHMKGIDEQVKVFEAFMKNVKPQAVKA HHHHHCCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHH LKDKKWEDVATYYNGGNWRKKNPDYAKNLGDFYASFK HHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure AHPHHTQHPAGPKAPPSPYVEVTFLFRDTLQKPIEGLTVQIKAGAGAPQAPAWKLGPDG CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCC DDPPATDPASAPAANPSVPMVDNKADALVTDKDGYALTIQNAARNQPIDVLVKNQRGEYV CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEECCCCCCCCEEEEEECCCCCEE WKATVTPKKDISAFTIVSPEYHLEATTKLTPTEELQQNLDLPVVQQGEVMTIARLVHDFG EEEECCCCCCCCEEEEECCCEEEEEECCCCCHHHHHHCCCCCEECCCCHHHHHHHHHHHC PYIGWSQKVTEQGRVKKDFPEKKKDVTEDPVTHKKKTKITIEHHYKVVDTGKPQTVALNV CCCCCCHHHHHCCCCCCCCCHHHHCCCCCCCCCCCCEEEEEEEEEEEEECCCCCEEEEEE LGSRLSYPKSILLTDDHFSYLANSLGCEAAAIKALSKQETVGKGMWQPDHGFDKNGLPRI HHHHHCCCCEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH LYERHKFYAYTMPDTNKNSKNKPVSPYAKKYPDICNPASGGFGKEGLHQYERFCRAASLD HHHCCEEEEEECCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC MEAAAKSSSWGAFQILGEAYDGCGFSSAVDFANQHMKGIDEQVKVFEAFMKNVKPQAVKA HHHHHCCCCCCCEEEHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHH LKDKKWEDVATYYNGGNWRKKNPDYAKNLGDFYASFK HHCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA