Definition Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence.
Accession NC_010622
Length 3,479,187

Click here to switch to the map view.

The map label for this gene is 186476642

Identifier: 186476642

GI number: 186476642

Start: 2144218

End: 2145888

Strand: Reverse

Name: 186476642

Synonym: Bphy_1887

Alternate gene names: NA

Gene position: 2145888-2144218 (Counterclockwise)

Preceding gene: 186476643

Following gene: 186476641

Centisome position: 61.68

GC content: 62.06

Gene sequence:

>1671_bases
ATGACACTCATCGTCGATTCCACCGGCAAGCCGTTCGCGGATCTGCCGGCAGGGGGGCGTGCGCGCGCAGATTCTGGATG
GGGCGGCCCGGGCATCACGCAGCCGTCATATTCGAGCCTCTTCCCGTACGAGGCCTCGAACATCCAGACGCCCGAGATGG
GCCAGTGGTTTCCTTACATCCGCTCGCCGGATTCGGAAATCAACCAGTTCCGCGATCGCATGGTCGCGCGTTCGCGCGAT
CTCGCGCGCAACGACGGCTGGGCTAGCGGTGGCATCACCCGCATTCTGGACAACACTGTCGGCGCGCATCTGCGTCTGTC
GGCAAACCCGGATTACCGATCGCTCTCGATGCGCGCGCGCGGATTCGATGCAACGTGGGCAGACGAGTTCCGACGTGCTG
TCGAAGCGCTCTGGCGCAACTACTCGGAGGACATCGAGCACTTCAACGATGTCTCCCGCCAGTTGACGATGTCGCAGCAG
CTGCGGCTTGCGCTCCGGCATAAGCTGATCGACGGCGAAAGTCTGTTCGTCAGCTACTGGATGCCGGAGCGGATCGGCGT
GGGAGGTGCTCGCTACGCTACGAGCTTCATGCTGATCGATCCGGACCGCCTGTCGAATCCGTACCAGATTGTCGACACGA
AATATCTGCGCGGCGGCGTTGAGATAGACGATTACGGTGTTCCGCTCGCGTATCACATCCGCAGGGCGCACCAGAACGAT
TGGTACAACGCTGTGGAGTCAATGGAGTGGGAGCGAGTCCCGCGCGTCGACGAAGACGGCTGGCGTCGCGTAGTGCACGA
CTTCGAGCGCGATCGCGCGGGGCAGAACCGCGGCATTGGTGTTTTCACGCCGGTGCTGGCGCACGCGAAGATGCTCGCCC
GGTACTACGGCGTCGAGCTGCAGGCCGCGACCGTCGCGACGATTTTCGGGACATACGTGACGAGCCCCTTCGATCCGAAG
ATGATCGAGTCGGCGATGGACAGCGATGGCGAAGAACTTGGGTTCTATCAGGACCTTCGCGCCGACTGGTCGAAAGAGCG
TCCCGCGATGCTCAACAGTGTTCGCATCCCAACGTTGGCGCCAGGCGAAGACATCAAGCAGGTCAACGCCGCGCATCCGC
ACAGTGGATTCGGCGAATTCGCGCATGAGATGCTCCGCTCGATCGCGGCCGCGCTTGGCGTATCCGCTGAGCAAATCACG
CAGGATTGGAGCAGGACGAACTATTCCAGCGCTCGAGCTGCGATGCTCGAAAGCTGGAAGACGCTGTCTCGTCGAAGCGC
TGACTTCAAGGTCGGCACCGCAACGCCGATCTACGCGTGCTGGCTTCGGGAGGCGATGGAAAACGGGGATCTCGACGATG
TCCTGCCGCGCAATGCGCCCGACTACATCGAAGCAGCAACCGAATACTCGCGCTGTGACTGGCTTGGCGTTGGACGGGGA
TATGTCGACGTTACAAAGGAGGCGGCCGGAGCAGTAATGCGCATGGATGGCGGCCTGTCGACGCTCCGCGACGAAGCGAA
GGAGCAGGGCCGAGATTGGGAGGAAGTCCTTCATCAGCGCGCACTGGAAGTCAAGATGTTCAAGGAGCTTGGTCTCAATC
CGCCCGACTGGGCTGGTGAGGTTGCCGCCGCCGAGGTGGGCAAGCCAGAGCCAACACCGCAACCGCAATAG

Upstream 100 bases:

>100_bases
AGCAAAGCGACATCACGCAGATTCGCAAAGCCATCGAGATGCTGCAAATGGCTCTCGGAATCATCTGTAACTATCCACGC
GCACGCAGGGTTCTTTTCTG

Downstream 100 bases:

>100_bases
TCCTTGACGCGCCTTCGGGCGCGTCTTCGTTTCAGCTGAGAAGAATGGAAAGAGAAACGAAGATTTACGTGCTTCGTGAC
CCCCGCACGCATGCTGTTCG

Product: lambda family phage portal protein

Products: NA

Alternate protein names: Lambda Family Phage Portal Protein; Phage Portal Protein; Bacteriophage Capsid Protein; Portal Protein; Phage Portal Protein Lambda; Portal Protein Lambda Family; Phage Portal Protein Of Lambda Family; Portal Protein B; Portal Protein Putative Prophage; Bacteriophage-Related Protein; Lytic Transglycosylase Catalytic; Bacteriophage Capsid Protein; Capsid Protein Of Prophage; Prophage; Portal Protein GPB Of Phage Lambda; Head-Tail Preconnector Protein Phage Origin; Phage Capsid Protein; Head Portal Protein; Phage Portal Protein Gp; Phage Portal Protein Lambda Family Protein; Phage-Related Portal Protein

Number of amino acids: Translated: 556; Mature: 555

Protein sequence:

>556_residues
MTLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYIRSPDSEINQFRDRMVARSRD
LARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRARGFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQ
LRLALRHKLIDGESLFVSYWMPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQND
WYNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVELQAATVATIFGTYVTSPFDPK
MIESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLAPGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQIT
QDWSRTNYSSARAAMLESWKTLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRG
YVDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGEVAAAEVGKPEPTPQPQ

Sequences:

>Translated_556_residues
MTLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYIRSPDSEINQFRDRMVARSRD
LARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRARGFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQ
LRLALRHKLIDGESLFVSYWMPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQND
WYNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVELQAATVATIFGTYVTSPFDPK
MIESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLAPGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQIT
QDWSRTNYSSARAAMLESWKTLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRG
YVDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGEVAAAEVGKPEPTPQPQ
>Mature_555_residues
TLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYIRSPDSEINQFRDRMVARSRDL
ARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRARGFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQL
RLALRHKLIDGESLFVSYWMPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQNDW
YNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVELQAATVATIFGTYVTSPFDPKM
IESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLAPGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQITQ
DWSRTNYSSARAAMLESWKTLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRGY
VDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGEVAAAEVGKPEPTPQPQ

Specific function: Unknown

COG id: COG5511

COG function: function code R; Bacteriophage capsid protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62538; Mature: 62406

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYI
CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RSPDSEINQFRDRMVARSRDLARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRAR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHCC
GFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQLRLALRHKLIDGESLFVSYW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
MPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQND
CHHHHCCCCHHHHEEEEEECHHHCCCCCEEHHHHHHHCCCEECCCCCCHHHHHHHHHCCH
WYNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVEL
HHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEE
QAATVATIFGTYVTSPFDPKMIESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLA
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHCCHHHHHHHCCCCCCCHHHHCCCCCCCC
PGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQITQDWSRTNYSSARAAMLESWK
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
TLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRG
HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCEEECCCC
YVDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGE
HHHHHHHHHCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
VAAAEVGKPEPTPQPQ
HHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYI
EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
RSPDSEINQFRDRMVARSRDLARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRAR
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHCC
GFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQLRLALRHKLIDGESLFVSYW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE
MPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQND
CHHHHCCCCHHHHEEEEEECHHHCCCCCEEHHHHHHHCCCEECCCCCCHHHHHHHHHCCH
WYNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVEL
HHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEE
QAATVATIFGTYVTSPFDPKMIESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLA
HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHCCHHHHHHHCCCCCCCHHHHCCCCCCCC
PGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQITQDWSRTNYSSARAAMLESWK
CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH
TLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRG
HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCEEECCCC
YVDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGE
HHHHHHHHHCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
VAAAEVGKPEPTPQPQ
HHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA