| Definition | Burkholderia phymatum STM815 chromosome chromosome 1, complete sequence. |
|---|---|
| Accession | NC_010622 |
| Length | 3,479,187 |
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The map label for this gene is 186476642
Identifier: 186476642
GI number: 186476642
Start: 2144218
End: 2145888
Strand: Reverse
Name: 186476642
Synonym: Bphy_1887
Alternate gene names: NA
Gene position: 2145888-2144218 (Counterclockwise)
Preceding gene: 186476643
Following gene: 186476641
Centisome position: 61.68
GC content: 62.06
Gene sequence:
>1671_bases ATGACACTCATCGTCGATTCCACCGGCAAGCCGTTCGCGGATCTGCCGGCAGGGGGGCGTGCGCGCGCAGATTCTGGATG GGGCGGCCCGGGCATCACGCAGCCGTCATATTCGAGCCTCTTCCCGTACGAGGCCTCGAACATCCAGACGCCCGAGATGG GCCAGTGGTTTCCTTACATCCGCTCGCCGGATTCGGAAATCAACCAGTTCCGCGATCGCATGGTCGCGCGTTCGCGCGAT CTCGCGCGCAACGACGGCTGGGCTAGCGGTGGCATCACCCGCATTCTGGACAACACTGTCGGCGCGCATCTGCGTCTGTC GGCAAACCCGGATTACCGATCGCTCTCGATGCGCGCGCGCGGATTCGATGCAACGTGGGCAGACGAGTTCCGACGTGCTG TCGAAGCGCTCTGGCGCAACTACTCGGAGGACATCGAGCACTTCAACGATGTCTCCCGCCAGTTGACGATGTCGCAGCAG CTGCGGCTTGCGCTCCGGCATAAGCTGATCGACGGCGAAAGTCTGTTCGTCAGCTACTGGATGCCGGAGCGGATCGGCGT GGGAGGTGCTCGCTACGCTACGAGCTTCATGCTGATCGATCCGGACCGCCTGTCGAATCCGTACCAGATTGTCGACACGA AATATCTGCGCGGCGGCGTTGAGATAGACGATTACGGTGTTCCGCTCGCGTATCACATCCGCAGGGCGCACCAGAACGAT TGGTACAACGCTGTGGAGTCAATGGAGTGGGAGCGAGTCCCGCGCGTCGACGAAGACGGCTGGCGTCGCGTAGTGCACGA CTTCGAGCGCGATCGCGCGGGGCAGAACCGCGGCATTGGTGTTTTCACGCCGGTGCTGGCGCACGCGAAGATGCTCGCCC GGTACTACGGCGTCGAGCTGCAGGCCGCGACCGTCGCGACGATTTTCGGGACATACGTGACGAGCCCCTTCGATCCGAAG ATGATCGAGTCGGCGATGGACAGCGATGGCGAAGAACTTGGGTTCTATCAGGACCTTCGCGCCGACTGGTCGAAAGAGCG TCCCGCGATGCTCAACAGTGTTCGCATCCCAACGTTGGCGCCAGGCGAAGACATCAAGCAGGTCAACGCCGCGCATCCGC ACAGTGGATTCGGCGAATTCGCGCATGAGATGCTCCGCTCGATCGCGGCCGCGCTTGGCGTATCCGCTGAGCAAATCACG CAGGATTGGAGCAGGACGAACTATTCCAGCGCTCGAGCTGCGATGCTCGAAAGCTGGAAGACGCTGTCTCGTCGAAGCGC TGACTTCAAGGTCGGCACCGCAACGCCGATCTACGCGTGCTGGCTTCGGGAGGCGATGGAAAACGGGGATCTCGACGATG TCCTGCCGCGCAATGCGCCCGACTACATCGAAGCAGCAACCGAATACTCGCGCTGTGACTGGCTTGGCGTTGGACGGGGA TATGTCGACGTTACAAAGGAGGCGGCCGGAGCAGTAATGCGCATGGATGGCGGCCTGTCGACGCTCCGCGACGAAGCGAA GGAGCAGGGCCGAGATTGGGAGGAAGTCCTTCATCAGCGCGCACTGGAAGTCAAGATGTTCAAGGAGCTTGGTCTCAATC CGCCCGACTGGGCTGGTGAGGTTGCCGCCGCCGAGGTGGGCAAGCCAGAGCCAACACCGCAACCGCAATAG
Upstream 100 bases:
>100_bases AGCAAAGCGACATCACGCAGATTCGCAAAGCCATCGAGATGCTGCAAATGGCTCTCGGAATCATCTGTAACTATCCACGC GCACGCAGGGTTCTTTTCTG
Downstream 100 bases:
>100_bases TCCTTGACGCGCCTTCGGGCGCGTCTTCGTTTCAGCTGAGAAGAATGGAAAGAGAAACGAAGATTTACGTGCTTCGTGAC CCCCGCACGCATGCTGTTCG
Product: lambda family phage portal protein
Products: NA
Alternate protein names: Lambda Family Phage Portal Protein; Phage Portal Protein; Bacteriophage Capsid Protein; Portal Protein; Phage Portal Protein Lambda; Portal Protein Lambda Family; Phage Portal Protein Of Lambda Family; Portal Protein B; Portal Protein Putative Prophage; Bacteriophage-Related Protein; Lytic Transglycosylase Catalytic; Bacteriophage Capsid Protein; Capsid Protein Of Prophage; Prophage; Portal Protein GPB Of Phage Lambda; Head-Tail Preconnector Protein Phage Origin; Phage Capsid Protein; Head Portal Protein; Phage Portal Protein Gp; Phage Portal Protein Lambda Family Protein; Phage-Related Portal Protein
Number of amino acids: Translated: 556; Mature: 555
Protein sequence:
>556_residues MTLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYIRSPDSEINQFRDRMVARSRD LARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRARGFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQ LRLALRHKLIDGESLFVSYWMPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQND WYNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVELQAATVATIFGTYVTSPFDPK MIESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLAPGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQIT QDWSRTNYSSARAAMLESWKTLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRG YVDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGEVAAAEVGKPEPTPQPQ
Sequences:
>Translated_556_residues MTLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYIRSPDSEINQFRDRMVARSRD LARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRARGFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQ LRLALRHKLIDGESLFVSYWMPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQND WYNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVELQAATVATIFGTYVTSPFDPK MIESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLAPGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQIT QDWSRTNYSSARAAMLESWKTLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRG YVDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGEVAAAEVGKPEPTPQPQ >Mature_555_residues TLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYIRSPDSEINQFRDRMVARSRDL ARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRARGFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQL RLALRHKLIDGESLFVSYWMPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQNDW YNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVELQAATVATIFGTYVTSPFDPKM IESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLAPGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQITQ DWSRTNYSSARAAMLESWKTLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRGY VDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGEVAAAEVGKPEPTPQPQ
Specific function: Unknown
COG id: COG5511
COG function: function code R; Bacteriophage capsid protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62538; Mature: 62406
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYI CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RSPDSEINQFRDRMVARSRDLARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRAR CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHCC GFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQLRLALRHKLIDGESLFVSYW CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE MPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQND CHHHHCCCCHHHHEEEEEECHHHCCCCCEEHHHHHHHCCCEECCCCCCHHHHHHHHHCCH WYNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVEL HHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEE QAATVATIFGTYVTSPFDPKMIESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLA HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHCCHHHHHHHCCCCCCCHHHHCCCCCCCC PGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQITQDWSRTNYSSARAAMLESWK CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH TLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRG HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCEEECCCC YVDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGE HHHHHHHHHCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC VAAAEVGKPEPTPQPQ HHHHHCCCCCCCCCCC >Mature Secondary Structure TLIVDSTGKPFADLPAGGRARADSGWGGPGITQPSYSSLFPYEASNIQTPEMGQWFPYI EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC RSPDSEINQFRDRMVARSRDLARNDGWASGGITRILDNTVGAHLRLSANPDYRSLSMRAR CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEECCCCHHHHHHHCC GFDATWADEFRRAVEALWRNYSEDIEHFNDVSRQLTMSQQLRLALRHKLIDGESLFVSYW CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEE MPERIGVGGARYATSFMLIDPDRLSNPYQIVDTKYLRGGVEIDDYGVPLAYHIRRAHQND CHHHHCCCCHHHHEEEEEECHHHCCCCCEEHHHHHHHCCCEECCCCCCHHHHHHHHHCCH WYNAVESMEWERVPRVDEDGWRRVVHDFERDRAGQNRGIGVFTPVLAHAKMLARYYGVEL HHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCEE QAATVATIFGTYVTSPFDPKMIESAMDSDGEELGFYQDLRADWSKERPAMLNSVRIPTLA HHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHCCHHHHHHHCCCCCCCHHHHCCCCCCCC PGEDIKQVNAAHPHSGFGEFAHEMLRSIAAALGVSAEQITQDWSRTNYSSARAAMLESWK CCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHH TLSRRSADFKVGTATPIYACWLREAMENGDLDDVLPRNAPDYIEAATEYSRCDWLGVGRG HHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHHHCCCEEECCCC YVDVTKEAAGAVMRMDGGLSTLRDEAKEQGRDWEEVLHQRALEVKMFKELGLNPPDWAGE HHHHHHHHHCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC VAAAEVGKPEPTPQPQ HHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA