Click here to switch to the map view.

The map label for this gene is ybfI [H]

Identifier: 186476595

GI number: 186476595

Start: 2105875

End: 2106690

Strand: Direct

Name: ybfI [H]

Synonym: Bphy_1840

Alternate gene names: 186476595

Gene position: 2105875-2106690 (Clockwise)

Preceding gene: 186476587

Following gene: 186476596

Centisome position: 60.53

GC content: 65.56

Gene sequence:

>816_bases
ATGAACGATCAATGTTACTGGCGCGACCCGCAACTGCCGTTCGTGGAAAGCCGGCTCGCTTTCGGCTCGCGCGCGTGCTA
CGTCCCGCACACGCACGACACGCTGTCCATCGGCGCTGTCGACAGCGGCCACAGCCATTACGTATGCGGCGACGATCGCG
CGCGCCTCGGCCCGGGCAGCCTCGTGCTGATTCCTGCCACGCGGGTCCACGCGTGCAATCCCGATACGGACAGCGCGTGG
AGCTATCAGATGCTTCATCTCGATGTCGCGTGGGCGAGCGCGGTGCTGCGCGAGAGCGGCACTGCGAATGCCGACGACGT
GCTCGCGCGTCCGTCGATCAATCGGGACCGCGATGCGTACCAGCGTTATTGCGCACTGAACCGGCTGCTGTTCTCGAACG
CAGACAGTGCGGAAAAAGAAGCGGCGCTGATTCTTTTCGTCGGCGGACGCTCCTGGCTCGGCGAGGCGCGCAACGTCCCG
CCCGTGCCGCGCGTCGCAGTTGATCGCCTGAGACGGATCATGGATCTGCTACATGACGCGTATGACGAACGCCTGCCCAT
CGAGCAACTCGCGCAGATGGCTGGCATGAGCCGCTATGCGTTCATTCGCGCGTTTCGCGCCGCGACAGGCATGGCGCCGC
ACGCGTATCAACTGGATCTGCGCATCAACGCGGCACGCCGCCTGTTGCGCGATGGATGCGCGCTCACGGCCGTCGCACAT
GATCTCGGCTTCGCGGATCAGGCGCATTTCCAGCGCGCATTCAAGGAGCGCGTCGCGATGACGCCCGGCGCTTACCGCCG
CGCCGTCGGCCCATGA

Upstream 100 bases:

>100_bases
TTAAAAGTGCAATTGTGAACAACTGAAAGGCGCGCAAACGATTTCGCGGTTGCAATGCGGTGCAACTCCCACTGGGCTGC
GTTTATGCGATCATCGGATC

Downstream 100 bases:

>100_bases
GCACAGCAACGGCGTAACGGCGCGCACTTTTCTTCAATATCTCCACGCGCCCGTCCAGCAGACTCCCGGCACACACAAGG
AGTCGAGATGGGTCTTTCTC

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 271

Protein sequence:

>271_residues
MNDQCYWRDPQLPFVESRLAFGSRACYVPHTHDTLSIGAVDSGHSHYVCGDDRARLGPGSLVLIPATRVHACNPDTDSAW
SYQMLHLDVAWASAVLRESGTANADDVLARPSINRDRDAYQRYCALNRLLFSNADSAEKEAALILFVGGRSWLGEARNVP
PVPRVAVDRLRRIMDLLHDAYDERLPIEQLAQMAGMSRYAFIRAFRAATGMAPHAYQLDLRINAARRLLRDGCALTAVAH
DLGFADQAHFQRAFKERVAMTPGAYRRAVGP

Sequences:

>Translated_271_residues
MNDQCYWRDPQLPFVESRLAFGSRACYVPHTHDTLSIGAVDSGHSHYVCGDDRARLGPGSLVLIPATRVHACNPDTDSAW
SYQMLHLDVAWASAVLRESGTANADDVLARPSINRDRDAYQRYCALNRLLFSNADSAEKEAALILFVGGRSWLGEARNVP
PVPRVAVDRLRRIMDLLHDAYDERLPIEQLAQMAGMSRYAFIRAFRAATGMAPHAYQLDLRINAARRLLRDGCALTAVAH
DLGFADQAHFQRAFKERVAMTPGAYRRAVGP
>Mature_271_residues
MNDQCYWRDPQLPFVESRLAFGSRACYVPHTHDTLSIGAVDSGHSHYVCGDDRARLGPGSLVLIPATRVHACNPDTDSAW
SYQMLHLDVAWASAVLRESGTANADDVLARPSINRDRDAYQRYCALNRLLFSNADSAEKEAALILFVGGRSWLGEARNVP
PVPRVAVDRLRRIMDLLHDAYDERLPIEQLAQMAGMSRYAFIRAFRAATGMAPHAYQLDLRINAARRLLRDGCALTAVAH
DLGFADQAHFQRAFKERVAMTPGAYRRAVGP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30148; Mature: 30148

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDQCYWRDPQLPFVESRLAFGSRACYVPHTHDTLSIGAVDSGHSHYVCGDDRARLGPGS
CCCCCEEECCCCCHHHHHHHCCCCEEECCCCCCEEEEECCCCCCCEEEECCCCCCCCCCC
LVLIPATRVHACNPDTDSAWSYQMLHLDVAWASAVLRESGTANADDVLARPSINRDRDAY
EEEEECCEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHEECCCCCCCHHHH
QRYCALNRLLFSNADSAEKEAALILFVGGRSWLGEARNVPPVPRVAVDRLRRIMDLLHDA
HHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
YDERLPIEQLAQMAGMSRYAFIRAFRAATGMAPHAYQLDLRINAARRLLRDGCALTAVAH
HHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHCCHHHHHHHH
DLGFADQAHFQRAFKERVAMTPGAYRRAVGP
HCCCCHHHHHHHHHHHHHCCCCCHHHHCCCC
>Mature Secondary Structure
MNDQCYWRDPQLPFVESRLAFGSRACYVPHTHDTLSIGAVDSGHSHYVCGDDRARLGPGS
CCCCCEEECCCCCHHHHHHHCCCCEEECCCCCCEEEEECCCCCCCEEEECCCCCCCCCCC
LVLIPATRVHACNPDTDSAWSYQMLHLDVAWASAVLRESGTANADDVLARPSINRDRDAY
EEEEECCEEEECCCCCCCCCEEEEEEEHHHHHHHHHHHCCCCCHHHHEECCCCCCCHHHH
QRYCALNRLLFSNADSAEKEAALILFVGGRSWLGEARNVPPVPRVAVDRLRRIMDLLHDA
HHHHHHHHHHHCCCCCCCCCEEEEEEECCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
YDERLPIEQLAQMAGMSRYAFIRAFRAATGMAPHAYQLDLRINAARRLLRDGCALTAVAH
HHCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEEEEEEEHHHHHHHHCCHHHHHHHH
DLGFADQAHFQRAFKERVAMTPGAYRRAVGP
HCCCCHHHHHHHHHHHHHCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]