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The map label for this gene is glxA [H]

Identifier: 186476546

GI number: 186476546

Start: 2043935

End: 2044987

Strand: Reverse

Name: glxA [H]

Synonym: Bphy_1788

Alternate gene names: 186476546

Gene position: 2044987-2043935 (Counterclockwise)

Preceding gene: 186476547

Following gene: 186476545

Centisome position: 58.78

GC content: 63.44

Gene sequence:

>1053_bases
ATGCCTCGCCCGTCGTCCAGCCCGGCCCGCACGACCCAGGTCGCGATCGTCGCGTTGCCGCCCGTGTCGATGTCGGGCGT
CGGGCCGATCGTCGATGCGCTCAATCTCGCCAATGAAATCGACGGCCGCGCGCTGTACCGATGGCAGGTGTGTTCGTGGG
ACGGCCGCCCGGTGCCGCTCGCGGGCGGCGCGCTGTGGCCGGCCGATGCTGCGTTCGGCGATGCGATTGCGTGCGACTGG
CTGATTATCGTCAGCGAGCGCTTTCAGCAATTCGCGGACTACCGGTTGTTTCTTGCGAGCCTGTCGCGTGTCGGGCAACG
CACGCCGCTGGTGACGGGCATTCATCATGGCGTGTGGTGGCTCGCGATGGCGGGGCAGCTATCCGGCTATCGCGTGAGTG
TGAACTGGGAGACGTATCAGCAGTTCATCGAGCAATTCGAGCGTTCCATCGTCACGCAGCAGATCTTCGAAATCGATCGC
GACCGGGCCACCTGCGCGGGCGGCCAGGCGACCGTCGATTTCATGCTGGCGATGATCGGGCGCGAGCATGGTCCTGAACT
TGCCGAACGGATCGCCGATACGATGGGTGTCGGCACGCTGCGTTCCGGCGAAGAGCGGCAGCGCATACCGTTTGTGACCG
CGCCTGGCGAGCGGCATCCACGGTTGAATGATGCGTTGCTGCTGATGGAGGCGAATATCGAGGATCCGTTGACGTCGGAT
GAGATCGCTGGATTGGTCGGCGTATCGCGCCGACAGTTGGAGCGCTTGTTCCGGCAGTATCTTGGCTCGATGCCTTCGAA
GTACTACCTCGGTTTGCGTCTCGCGAAGGCGCGTACGCAGTTGCAGCGGACCAGCAAGTCCGTTGTGCAGATCAGTCTTG
CATGTGGGTTTTCTTCTGCTGCGCATTTCTCCAATGCCTACCGTGAGCGGTTTGGCGTGACCCCGCGTGAGGAGCGGCGC
AACTGGATCGAGAAGCAGCACGGAGCGGGTGTTGCACGCGCTGGGGTGGATGAGCCGCGGGCGGGGGCGTTGATCGAAAG
GCCAGAGGTTTAA

Upstream 100 bases:

>100_bases
GTCGGAAGTGCTGGTGACGCCGAAGAGCGAACGCCTGAAGCAGTTCCTGTCCGGCAGCCTCAAGTAATCGGGTGTCCCGA
CCGTTCCTTCGTACATCGCA

Downstream 100 bases:

>100_bases
GGGTTTCATGTCTTCGACTGCGTCGCAGACATAAAAAAAGAACCCGTCGCTTCCACGCAAGAACATCCCCCCACTGTCAC
CTAAACTACGGATCATTACT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MPRPSSSPARTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRALYRWQVCSWDGRPVPLAGGALWPADAAFGDAIACDW
LIIVSERFQQFADYRLFLASLSRVGQRTPLVTGIHHGVWWLAMAGQLSGYRVSVNWETYQQFIEQFERSIVTQQIFEIDR
DRATCAGGQATVDFMLAMIGREHGPELAERIADTMGVGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLTSD
EIAGLVGVSRRQLERLFRQYLGSMPSKYYLGLRLAKARTQLQRTSKSVVQISLACGFSSAAHFSNAYRERFGVTPREERR
NWIEKQHGAGVARAGVDEPRAGALIERPEV

Sequences:

>Translated_350_residues
MPRPSSSPARTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRALYRWQVCSWDGRPVPLAGGALWPADAAFGDAIACDW
LIIVSERFQQFADYRLFLASLSRVGQRTPLVTGIHHGVWWLAMAGQLSGYRVSVNWETYQQFIEQFERSIVTQQIFEIDR
DRATCAGGQATVDFMLAMIGREHGPELAERIADTMGVGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLTSD
EIAGLVGVSRRQLERLFRQYLGSMPSKYYLGLRLAKARTQLQRTSKSVVQISLACGFSSAAHFSNAYRERFGVTPREERR
NWIEKQHGAGVARAGVDEPRAGALIERPEV
>Mature_349_residues
PRPSSSPARTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRALYRWQVCSWDGRPVPLAGGALWPADAAFGDAIACDWL
IIVSERFQQFADYRLFLASLSRVGQRTPLVTGIHHGVWWLAMAGQLSGYRVSVNWETYQQFIEQFERSIVTQQIFEIDRD
RATCAGGQATVDFMLAMIGREHGPELAERIADTMGVGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLTSDE
IAGLVGVSRRQLERLFRQYLGSMPSKYYLGLRLAKARTQLQRTSKSVVQISLACGFSSAAHFSNAYRERFGVTPREERRN
WIEKQHGAGVARAGVDEPRAGALIERPEV

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=100, Percent_Identity=38, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790857, Length=100, Percent_Identity=30, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38834; Mature: 38703

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRPSSSPARTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRALYRWQVCSWDGRPVPL
CCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
AGGALWPADAAFGDAIACDWLIIVSERFQQFADYRLFLASLSRVGQRTPLVTGIHHGVWW
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LAMAGQLSGYRVSVNWETYQQFIEQFERSIVTQQIFEIDRDRATCAGGQATVDFMLAMIG
HHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHC
REHGPELAERIADTMGVGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLTSD
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCHH
EIAGLVGVSRRQLERLFRQYLGSMPSKYYLGLRLAKARTQLQRTSKSVVQISLACGFSSA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHH
AHFSNAYRERFGVTPREERRNWIEKQHGAGVARAGVDEPRAGALIERPEV
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PRPSSSPARTTQVAIVALPPVSMSGVGPIVDALNLANEIDGRALYRWQVCSWDGRPVPL
CCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCC
AGGALWPADAAFGDAIACDWLIIVSERFQQFADYRLFLASLSRVGQRTPLVTGIHHGVWW
CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LAMAGQLSGYRVSVNWETYQQFIEQFERSIVTQQIFEIDRDRATCAGGQATVDFMLAMIG
HHHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHC
REHGPELAERIADTMGVGTLRSGEERQRIPFVTAPGERHPRLNDALLLMEANIEDPLTSD
CCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEECCCCCCCCHH
EIAGLVGVSRRQLERLFRQYLGSMPSKYYLGLRLAKARTQLQRTSKSVVQISLACGFSSA
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEECCCCCHH
AHFSNAYRERFGVTPREERRNWIEKQHGAGVARAGVDEPRAGALIERPEV
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]