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The map label for this gene is yjcC [C]

Identifier: 186476502

GI number: 186476502

Start: 1987323

End: 1988597

Strand: Direct

Name: yjcC [C]

Synonym: Bphy_1744

Alternate gene names: 186476502

Gene position: 1987323-1988597 (Clockwise)

Preceding gene: 186476500

Following gene: 186476504

Centisome position: 57.12

GC content: 64.47

Gene sequence:

>1275_bases
ATGCCTAACGTCGACGATACGACGCTCACCGGCCTTCTGCAGCACATGGTGCAGGACGAGGCCGGATGGGCTGCGCCGTG
GCGAACCATTACCTTGCGCAGCGTTTTCCAGCCGGTCGTCTCCGTGACGCATCAGCGCGTGGTCGGCTATGAGGCGTTGC
TGCGCGCCTTCGATCCCGTCGGCCATCCCATCTCGCCCGCCGTACTGTTCTCGGGCACCCGCTCGACAGGCGAGGCGCGC
GCGCTCGATCGTCTCGCGCGCTGCCTGCATGTAGCGAACTTCATGGCGCAAGGCATCGCGACGGGATGGCTGTTCCTGAA
CACGCGTCCGCAGGTATTCGAAACGGGCTGGCCGCAGCGCCCGTTCATCGACGAACTGTCGGAGCATTTCGGACTGCCGC
AGGAACGCATCGTGATCGAAGTGCTCGAGCAGCCGGCCGATGATGAATCGGCCGTCGCCAGCATGCTCGCCGCATCCCAG
CCGCGAGAATTCCTGATCGCCATCGACGACTTCGGCACCGGCTTTTCTAACTTCGACCGCGTGTGGCGCTTCCGGCCGGA
CATCGTGAAACTCGACCGCTCGCTGGTGGCGCGCGCCGGCCGCCAGGACAACGATAATTCGCTGATCGCTCATCTGATCA
ACATGCTGCATCAATCGGGCACGCTGGTGCTGGCGGAAGGCGTCGAAACGGAAAACGAACTGATGACGTTGATGCAGGCC
GACGTCGATTTCGTCCAGGGTTACTGGTTCGGCCAACCGAAGGGCTCGATCCAGGCGGCGAGCGCGCGCGTGCCCGAGCT
GCTCGAACAGATGTGGACACGTTTCGAGAGCTACGAGCAAACGCATTCGCGCTATCAGCGGCCCGGCTTCGAGGGCTTTA
CGGAAGCCGTGCTCGCGGGCGCGTCGCTGTATATGCAGACAGGCGATCTCGAACAAGCCGCGAAGCCTGTCTTCCTCGTG
CCCGATGCGCGCCGCGTCTTCGTGCTGAACGATCGCGGCGAACAGCTGGCGCCGTCGATCACCGCGCGCGGCACGCCGCC
TCCCCCTGCCCGCCTCGCACCGCTCTTGCCCGACACGCACAACAACTGGTCGCGGCGCGCATATTTCAAGCACGCGCTCG
CCGCGCCGGGCCGTGTCGCGATGATGGGGCCGCACTGTTCGCTGATGGACGGCCAGGATTGCTACACGGCCGCCGTGACC
GTCGAGCGCAACGGTCAGACGCATGTGTTTTGCGTCGATTTCCTACCCGAAATGCGCAACGCAAGCACCGTGTGA

Upstream 100 bases:

>100_bases
TCGGGCCCGACCTCCATTGCGCCGATGCTGGACAGGCCTGCCGCCGGCATGCCGCTGCATCCGGGCGAGCGCCGCACGCT
GCATAGGACAATCTGCCGTC

Downstream 100 bases:

>100_bases
CGCACCGCGGATGCGCCGCGCTAGTCGTGGTCGACGCGCTGCCGCCCCGACTTCACATCGCTGCGCCTAGCCTTGCTTTC
GAGCCGCCGTTCTTTCGACG

Product: diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 423

Protein sequence:

>424_residues
MPNVDDTTLTGLLQHMVQDEAGWAAPWRTITLRSVFQPVVSVTHQRVVGYEALLRAFDPVGHPISPAVLFSGTRSTGEAR
ALDRLARCLHVANFMAQGIATGWLFLNTRPQVFETGWPQRPFIDELSEHFGLPQERIVIEVLEQPADDESAVASMLAASQ
PREFLIAIDDFGTGFSNFDRVWRFRPDIVKLDRSLVARAGRQDNDNSLIAHLINMLHQSGTLVLAEGVETENELMTLMQA
DVDFVQGYWFGQPKGSIQAASARVPELLEQMWTRFESYEQTHSRYQRPGFEGFTEAVLAGASLYMQTGDLEQAAKPVFLV
PDARRVFVLNDRGEQLAPSITARGTPPPPARLAPLLPDTHNNWSRRAYFKHALAAPGRVAMMGPHCSLMDGQDCYTAAVT
VERNGQTHVFCVDFLPEMRNASTV

Sequences:

>Translated_424_residues
MPNVDDTTLTGLLQHMVQDEAGWAAPWRTITLRSVFQPVVSVTHQRVVGYEALLRAFDPVGHPISPAVLFSGTRSTGEAR
ALDRLARCLHVANFMAQGIATGWLFLNTRPQVFETGWPQRPFIDELSEHFGLPQERIVIEVLEQPADDESAVASMLAASQ
PREFLIAIDDFGTGFSNFDRVWRFRPDIVKLDRSLVARAGRQDNDNSLIAHLINMLHQSGTLVLAEGVETENELMTLMQA
DVDFVQGYWFGQPKGSIQAASARVPELLEQMWTRFESYEQTHSRYQRPGFEGFTEAVLAGASLYMQTGDLEQAAKPVFLV
PDARRVFVLNDRGEQLAPSITARGTPPPPARLAPLLPDTHNNWSRRAYFKHALAAPGRVAMMGPHCSLMDGQDCYTAAVT
VERNGQTHVFCVDFLPEMRNASTV
>Mature_423_residues
PNVDDTTLTGLLQHMVQDEAGWAAPWRTITLRSVFQPVVSVTHQRVVGYEALLRAFDPVGHPISPAVLFSGTRSTGEARA
LDRLARCLHVANFMAQGIATGWLFLNTRPQVFETGWPQRPFIDELSEHFGLPQERIVIEVLEQPADDESAVASMLAASQP
REFLIAIDDFGTGFSNFDRVWRFRPDIVKLDRSLVARAGRQDNDNSLIAHLINMLHQSGTLVLAEGVETENELMTLMQAD
VDFVQGYWFGQPKGSIQAASARVPELLEQMWTRFESYEQTHSRYQRPGFEGFTEAVLAGASLYMQTGDLEQAAKPVFLVP
DARRVFVLNDRGEQLAPSITARGTPPPPARLAPLLPDTHNNWSRRAYFKHALAAPGRVAMMGPHCSLMDGQDCYTAAVTV
ERNGQTHVFCVDFLPEMRNASTV

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1790496, Length=222, Percent_Identity=26.5765765765766, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI87081845, Length=229, Percent_Identity=27.9475982532751, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI87081980, Length=231, Percent_Identity=29.8701298701299, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1788502, Length=224, Percent_Identity=28.125, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI87081921, Length=226, Percent_Identity=23.8938053097345, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI87082096, Length=134, Percent_Identity=30.5970149253731, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787410, Length=231, Percent_Identity=25.1082251082251, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1788849, Length=212, Percent_Identity=26.4150943396226, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI87081743, Length=220, Percent_Identity=25, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1786507, Length=129, Percent_Identity=25.5813953488372, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 47215; Mature: 47084

Theoretical pI: Translated: 5.41; Mature: 5.41

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNVDDTTLTGLLQHMVQDEAGWAAPWRTITLRSVFQPVVSVTHQRVVGYEALLRAFDPV
CCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GHPISPAVLFSGTRSTGEARALDRLARCLHVANFMAQGIATGWLFLNTRPQVFETGWPQR
CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHCCCCCC
PFIDELSEHFGLPQERIVIEVLEQPADDESAVASMLAASQPREFLIAIDDFGTGFSNFDR
CHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH
VWRFRPDIVKLDRSLVARAGRQDNDNSLIAHLINMLHQSGTLVLAEGVETENELMTLMQA
HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
DVDFVQGYWFGQPKGSIQAASARVPELLEQMWTRFESYEQTHSRYQRPGFEGFTEAVLAG
HHHHHHCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ASLYMQTGDLEQAAKPVFLVPDARRVFVLNDRGEQLAPSITARGTPPPPARLAPLLPDTH
HHHEEECCCHHHHCCCEEEECCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
NNWSRRAYFKHALAAPGRVAMMGPHCSLMDGQDCYTAAVTVERNGQTHVFCVDFLPEMRN
CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCHHHCC
ASTV
CCCC
>Mature Secondary Structure 
PNVDDTTLTGLLQHMVQDEAGWAAPWRTITLRSVFQPVVSVTHQRVVGYEALLRAFDPV
CCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GHPISPAVLFSGTRSTGEARALDRLARCLHVANFMAQGIATGWLFLNTRPQVFETGWPQR
CCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCEEEECCCCCHHHCCCCCC
PFIDELSEHFGLPQERIVIEVLEQPADDESAVASMLAASQPREFLIAIDDFGTGFSNFDR
CHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHH
VWRFRPDIVKLDRSLVARAGRQDNDNSLIAHLINMLHQSGTLVLAEGVETENELMTLMQA
HHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
DVDFVQGYWFGQPKGSIQAASARVPELLEQMWTRFESYEQTHSRYQRPGFEGFTEAVLAG
HHHHHHCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
ASLYMQTGDLEQAAKPVFLVPDARRVFVLNDRGEQLAPSITARGTPPPPARLAPLLPDTH
HHHEEECCCHHHHCCCEEEECCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCC
NNWSRRAYFKHALAAPGRVAMMGPHCSLMDGQDCYTAAVTVERNGQTHVFCVDFLPEMRN
CCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEEEEEEEECCCCEEEEEEECCHHHCC
ASTV
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1661370 [H]