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The map label for this gene is nodJ [H]

Identifier: 186476393

GI number: 186476393

Start: 1856583

End: 1857410

Strand: Direct

Name: nodJ [H]

Synonym: Bphy_1635

Alternate gene names: 186476393

Gene position: 1856583-1857410 (Clockwise)

Preceding gene: 186476392

Following gene: 186476397

Centisome position: 53.36

GC content: 65.82

Gene sequence:

>828_bases
ATGGACGCACGCACCTACGATTCCCCCGACCATCACGCGTCGATGCGCGAGCGCTTCGCCGCGCTGCCCGCGAACGCCGT
CAACTGGATGGCCGTCTGGCGGCGCAACTATCTGGTGTGGCGCAAGCTCGCGCTCGCATCGATGTTCGGCAATCTCGCCG
ATCCGATGATCTATCTGTTCGGGCTGGGCTTCGGCCTGGGGCTGATGGTCGGGCATGTCGACGGCGTGTCGTACATCTCG
TTCCTCGCGGCGGGCACGGTGGCCTCGAGCGTGATGATGTCGGCGAGCTTCGAGTCGATGTATTCCGGCTTTTCGCGGAT
GCACGTCCAGCGCACGTGGGAGGCGATCATGCACACGCCGCTCACGCTCGGCGACATCGTGCTGGGGGAAGTCGTGTGGG
CGGGCAGCAAGGCCGTGCTGTCGGGCGTCGCGATCATGCTGGTGGCGGGCGCGCTCGGCTATGCGAGCTTTCCGTCGATG
CTGATCGCACTGCCCGTCATCGTGCTGGCGGGTCTCGCGTTCGCCAGCACCGCGATGATCGTGACGGCGCTCGCGCCCTC
GTACGATTTCTTCATGTTCTACCAGACGCTGGTGCTCACACCGATGCTGCTACTCTCGGGCGTCTTCTTCCCGCTGTCAC
AATTGCCGCGCGCCGCGCAGATCGCGGCGCAACTGCTGCCGCTCGTGCATGCCGTCGATCTGATCCGGCCGGCCATGCTC
GACCGTCCGATCGACGACGCCGCGCTGCATGTGGCCGTGCTTGCCACCTATGTGGTGGTGCCGTTCTGCGTGTCGGCGGT
GCTGCTTCGCCGGCGCATGATGCGCTAA

Upstream 100 bases:

>100_bases
CCGGCCAATCTCGAAGACGTCTTTCTGCGGCTGACCGGCCGCGAAATGCAGGACTGAGGCGACCCACGCACAAAATCCGC
CACACAACCGACCACGCAAA

Downstream 100 bases:

>100_bases
GGGCGCCGCAGCGCAGTCTGTGCTGCACGGCGGCGCCCTCGGGCAGATCCTTTCAGATCACTCTTCGTCGTCGGACCAGG
GCACATCGACGTCCGAAATA

Product: ABC transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 275; Mature: 275

Protein sequence:

>275_residues
MDARTYDSPDHHASMRERFAALPANAVNWMAVWRRNYLVWRKLALASMFGNLADPMIYLFGLGFGLGLMVGHVDGVSYIS
FLAAGTVASSVMMSASFESMYSGFSRMHVQRTWEAIMHTPLTLGDIVLGEVVWAGSKAVLSGVAIMLVAGALGYASFPSM
LIALPVIVLAGLAFASTAMIVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPLSQLPRAAQIAAQLLPLVHAVDLIRPAML
DRPIDDAALHVAVLATYVVVPFCVSAVLLRRRMMR

Sequences:

>Translated_275_residues
MDARTYDSPDHHASMRERFAALPANAVNWMAVWRRNYLVWRKLALASMFGNLADPMIYLFGLGFGLGLMVGHVDGVSYIS
FLAAGTVASSVMMSASFESMYSGFSRMHVQRTWEAIMHTPLTLGDIVLGEVVWAGSKAVLSGVAIMLVAGALGYASFPSM
LIALPVIVLAGLAFASTAMIVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPLSQLPRAAQIAAQLLPLVHAVDLIRPAML
DRPIDDAALHVAVLATYVVVPFCVSAVLLRRRMMR
>Mature_275_residues
MDARTYDSPDHHASMRERFAALPANAVNWMAVWRRNYLVWRKLALASMFGNLADPMIYLFGLGFGLGLMVGHVDGVSYIS
FLAAGTVASSVMMSASFESMYSGFSRMHVQRTWEAIMHTPLTLGDIVLGEVVWAGSKAVLSGVAIMLVAGALGYASFPSM
LIALPVIVLAGLAFASTAMIVTALAPSYDFFMFYQTLVLTPMLLLSGVFFPLSQLPRAAQIAAQLLPLVHAVDLIRPAML
DRPIDDAALHVAVLATYVVVPFCVSAVLLRRRMMR

Specific function: Part of the ABC transporter complex nodIJ involved in the export of the nodulation factors (Nod factors), the bacterial signal molecules that induce symbiosis and subsequent nodulation induction. Nod factors are LCO (lipo-chitin oligosaccharide), a modifi

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525
- InterPro:   IPR005981 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29908; Mature: 29908

Theoretical pI: Translated: 8.94; Mature: 8.94

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.9 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.9 %Met     (Mature Protein)
7.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDARTYDSPDHHASMRERFAALPANAVNWMAVWRRNYLVWRKLALASMFGNLADPMIYLF
CCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GLGFGLGLMVGHVDGVSYISFLAAGTVASSVMMSASFESMYSGFSRMHVQRTWEAIMHTP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
LTLGDIVLGEVVWAGSKAVLSGVAIMLVAGALGYASFPSMLIALPVIVLAGLAFASTAMI
CHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VTALAPSYDFFMFYQTLVLTPMLLLSGVFFPLSQLPRAAQIAAQLLPLVHAVDLIRPAML
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
DRPIDDAALHVAVLATYVVVPFCVSAVLLRRRMMR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11481432 [H]